| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,032,979 – 19,033,092 |
| Length | 113 |
| Max. P | 0.632513 |
| Location | 19,032,979 – 19,033,092 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.46 |
| Mean single sequence MFE | -37.98 |
| Consensus MFE | -21.21 |
| Energy contribution | -21.80 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19032979 113 + 20766785 AGGAUAGCCCACCAUCUACACCCAGAAUCGAGGACAGUGGCAUUAGCGAAACAACCUCACUGUUUCGACCAUCUCACAGUCUCUCGGAGGCUCAAAACAUGGGCUGGCGGGAU .......(((.((..............((((((((.((((.((...(((((((.......)))))))...)).)))).))).))))).((((((.....)))))))).))).. ( -36.20) >DroSim_CAF1 135041 113 + 1 AGGAUAGCCCAGCAUCUACGCCCACAAUCGAGGACAGUGGCAUCAGCGAAACAACCUCUCUGUUUCGACCCUCUCACAGUCUCUCUGAGGCUCAAAACAUGGGCUGGCGGGAU .((.....))...((((.((((.....((((((((.((((......(((((((.......)))))))......)))).))).))).))((((((.....)))))))))))))) ( -34.00) >DroEre_CAF1 138591 113 + 1 AGGAUAGCCCGGCACCUACGCCCACAAUUGAGGACAGUGGCAUUAGCGAAACAACCUCUCUGUUUCGACCCUCACACAGCCUCUCGGAGGCUCAAAACAUGGGCUGGCGGGAU .......((((.((.....(((((....(((((......((....))((((((.......))))))...)))))...((((((...)))))).......))))))).)))).. ( -38.30) >DroYak_CAF1 135692 113 + 1 AGGAUAGCCCAGCAUCUACGCCCACAAUCGAGGACAGUGGCAUUAGCGAAACAACCUCUCUGUUUCGACCCUCUCACAGUCUUUCGGAGGCUCAAAACAUGGGCUGGCGGGAU .((.....))...((((.((((.....((((((((.((((......(((((((.......)))))))......)))).))).))))).((((((.....)))))))))))))) ( -34.20) >DroMoj_CAF1 183352 104 + 1 ---------CAGCCACGCCGUCCAGCAUUGAGGAUAGUGGCAUCUGUGCCACGCCCUCACUGCUCAAGCCCACCCACAGCCUGGCCGAGGCACAGAGCAUGAGCUGGCGCGAA ---------......(((.(.(((((..(((((...((((((....))))))..))))).(((((..((((..(((.....)))..).)))...)))))...))))))))).. ( -43.40) >DroAna_CAF1 139117 113 + 1 AGGACGCACCUACCUCAACGCCCACGAUUGAGGACAGUGGGAUCAGUGUAACCAAUUCAUUAUUCCGCCCCAGCCACAGUCUUGCGGAAGCCAAGAACAUGGGCUGGCGGGAA .((((((.((((((((((((....)).))))))....))))....))))..)).........(((((((..((((.((.((((((....).)))))...))))))))))))). ( -41.80) >consensus AGGAUAGCCCAGCAUCUACGCCCACAAUCGAGGACAGUGGCAUCAGCGAAACAACCUCACUGUUUCGACCCUCUCACAGUCUCUCGGAGGCUCAAAACAUGGGCUGGCGGGAU ..................((((.......((((...((((......(((((((.......)))))))......))))..)))).....((((((.....)))))))))).... (-21.21 = -21.80 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:17 2006