Locus 6048

Sequence ID 2R_DroMel_CAF1
Location 19,031,606 – 19,031,696
Length 90
Max. P 0.575277
window9694

overview

Window 4

Location 19,031,606 – 19,031,696
Length 90
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.93
Mean single sequence MFE -28.95
Consensus MFE -18.05
Energy contribution -18.88
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.62
SVM decision value 0.08
SVM RNA-class probability 0.575277
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19031606 90 - 20766785
------------AAGUUACCCAAGCGAAAAACGCGCGUAGAAGUCUGACUUUUGCGGACAUUUAACGCGCUCGAGUCGCACGCUG-CACGCCUAUCGCUAGUA
------------..........(((((.....((((((.((((((((.(....)))))).))).))))))....((.((.....)-))).....))))).... ( -27.00)
>DroSec_CAF1 129520 90 - 1
------------AAGUUACCCAAGCGAAAAACGCGCGUAGAAGUCUGACUUUUGCGUGCAUUUAAGGCGCUCGAGCCGCACGCUG-CACGUCUAUCGCUAGUA
------------..........(((((.....(((((((((((.....))))))))))).....(((((..(.(((.....))))-..))))).))))).... ( -30.30)
>DroSim_CAF1 133669 90 - 1
------------AAGUUACCCAAGCGAAAAACGCGCGUAGAAGUCUGACUUUUGCGGGCAUUUAAGGCGCUCGAGCCGCACGCUG-CACGUCUAUCGCUAGUA
------------..........(((((.....((.((((((((.....)))))))).)).....(((((..(.(((.....))))-..))))).))))).... ( -28.10)
>DroEre_CAF1 137220 90 - 1
------------AAGUCACCGAAGCGAAAAACGCGCGUAGAAGUACCACUUUUGCGGGCAUUUAACGCGGACGAGUCGCACGCUG-CUCGCCUUUGGCAAAUA
------------......((((((((..(((.((.((((((((.....)))))))).)).)))..)))((.(((((.(....).)-)))))))))))...... ( -31.60)
>DroYak_CAF1 134317 90 - 1
------------AAGUCACCCAAGCGAAAAACGCGCGUAGAAGUCCCACUUUUGCGGGCAUUUAACGCGGCCGAGUCGCACGCUG-CACGUCUUUCACAAAUA
------------(((.(.....((((......((.((((((((.....)))))))).)).......(((((...))))).)))).-...).)))......... ( -26.00)
>DroPer_CAF1 134728 102 - 1
CGCACUUCACUAAAGCUGCCCAAGCGAAAAACGCGCGUAGAUGGUGAAGUUGUGCGCGCAUUUAGUGCGGUCCAGUCGCACGCAAUCACACCCUCUGCU-AUA
.(((((((((((...((((....(((.....)))..)))).))))))))).((((((((((...))))).......)))))))................-... ( -30.71)
>consensus
____________AAGUUACCCAAGCGAAAAACGCGCGUAGAAGUCUGACUUUUGCGGGCAUUUAACGCGCUCGAGUCGCACGCUG_CACGCCUAUCGCUAAUA
......................((((......((.((((((((.....)))))))).)).......(((.......))).))))................... (-18.05 = -18.88 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:15 2006