Locus 6047

Sequence ID 2R_DroMel_CAF1
Location 19,029,540 – 19,029,632
Length 92
Max. P 0.871894
window9693

overview

Window 3

Location 19,029,540 – 19,029,632
Length 92
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 71.40
Mean single sequence MFE -28.32
Consensus MFE -8.79
Energy contribution -12.71
Covariance contribution 3.92
Combinations/Pair 1.36
Mean z-score -2.29
Structure conservation index 0.31
SVM decision value 0.87
SVM RNA-class probability 0.871894
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19029540 92 + 20766785
AGUGGCAAAUUCCUUUGGCUUUGCCUUU-------GGCUUCGGCUUUUUUACGAGGCAAUUCCA---UUUGCGUUCG-CCCCAAAAGAGUUGGU--CGCACUGAU
.(((((.(((((.(((((..(((((((.-------(((....))).......))))))).....---...((....)-).))))).))))).))--)))...... ( -28.90)
>DroPse_CAF1 131743 85 + 1
CGAGGG-AAUUCCUUUGGCUU-------------------UCGGUUUUUUACGGCCACAUUCCAAUAUUUGUGUGGGGCCGUGAAAGGGAUGCGGGGGCGAUGUU
((((((-....))))))(((.-------------------.((.((((((((((((.(((..((.....)).))).))))))))))))....))..)))...... ( -32.80)
>DroSec_CAF1 127394 92 + 1
AGUGGCAAAUUCCUUUGGCUUUGCCUUU-------GGCUUCGGCUUUUUUACGAGGCAAUUCCA---UUUGCGUUUG-CCCCAAAAGAGUUGGG--UGCACUGAU
((((((((((.(...(((..(((((((.-------(((....))).......)))))))..)))---...).)))))-)(((((.....)))))--..))))... ( -31.50)
>DroEre_CAF1 135186 92 + 1
AGUGGCAAAUUCCUUUGGCUUUGCCUUU-------GGCUUCGGCUUUUUUACGAGGCAAUUCCA---UUUGCGUUUG-CCCCAAAAGAGUUGGG--UGCACUGAU
((((((((((.(...(((..(((((((.-------(((....))).......)))))))..)))---...).)))))-)(((((.....)))))--..))))... ( -31.50)
>DroYak_CAF1 132284 75 + 1
-----------------GCUUUGCCUUU-------GGCUUCGGCUUUUUUACGAGGCAAUUCCA---UUUGCGUUUG-CCCCGAAAGAGUUGCG--UGCACUGAU
-----------------((.(((((((.-------(((....))).......))))))).....---...((((..(-(..(....).)).)))--)))...... ( -19.30)
>DroAna_CAF1 135755 99 + 1
AAAGGCAAAUUCCUUUGGCUUUGCUUUCGCCCAACGGCUUCCACUUUUUUACGAGGCAAUUUCA---UUUGCCAAGG-CACUGAAAGAGUUGUA--UGCACUGAC
..(((((.((..((((..(..((((((.(((....)))................(((((.....---.)))))))))-))..)..))))..)).--))).))... ( -25.90)
>consensus
AGUGGCAAAUUCCUUUGGCUUUGCCUUU_______GGCUUCGGCUUUUUUACGAGGCAAUUCCA___UUUGCGUUUG_CCCCAAAAGAGUUGGG__UGCACUGAU
...............(((..(((((((........(((....))).......)))))))..))).....((((......(((((.....)))))..))))..... ( -8.79 = -12.71 +   3.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:14 2006