Locus 6046

Sequence ID 2R_DroMel_CAF1
Location 19,026,999 – 19,027,107
Length 108
Max. P 0.954088
window9692

overview

Window 2

Location 19,026,999 – 19,027,107
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -26.53
Consensus MFE -26.50
Energy contribution -25.96
Covariance contribution -0.55
Combinations/Pair 1.15
Mean z-score -2.07
Structure conservation index 1.00
SVM decision value 1.44
SVM RNA-class probability 0.954088
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19026999 108 - 20766785
UCAUGGAGAGCUGUUUCAGGAGGAGUUUAAUUAUGAAAUGAUUUGUUUGGACUCUCGACCUGGGAAUGCACAAACAAAAAUGUAAUCUAAUAUAUUAAGAGAUUUAGC
...((((..((..(..((((.(((((((((..(..((....))..))))))))))...))))..)..))....(((....)))..))))................... ( -19.50)
>DroSec_CAF1 124905 108 - 1
UCAUGGAGAGCUGUUCCAGGAGGAGUUUAAUUAUGAAAUGAUUUGUUUAGACUCUCGAUCUGGGAAUGCUCAAACAGAAAUGUAAUCCAAUAUACAAAGAGAUUUAGC
...((((((((..(((((((.(((((((((..(..((....))..))))))))))...)))))))..))))..(((....)))..))))................... ( -29.60)
>DroSim_CAF1 129537 108 - 1
UCAUGGAGAGCUGUUCCAGGAGGAGUUUAAUUAAGAAAUGAUUUGUUUAGACUCUCGAUCUGGGAAUGCUCAAACAGAAAUGUAAUCCAAUAUACAAAGAGAUUUAGC
...((((((((..(((((((.(((((((((.((((......)))).)))))))))...)))))))..))))..(((....)))..))))................... ( -30.50)
>consensus
UCAUGGAGAGCUGUUCCAGGAGGAGUUUAAUUAUGAAAUGAUUUGUUUAGACUCUCGAUCUGGGAAUGCUCAAACAGAAAUGUAAUCCAAUAUACAAAGAGAUUUAGC
...((((((((..(((((((.(((((((((................)))))))))...)))))))..))))..(((....)))..))))................... (-26.50 = -25.96 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:13 2006