Locus 6042

Sequence ID 2R_DroMel_CAF1
Location 19,004,502 – 19,004,617
Length 115
Max. P 0.797501
window9683

overview

Window 3

Location 19,004,502 – 19,004,617
Length 115
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 93.12
Mean single sequence MFE -38.72
Consensus MFE -31.06
Energy contribution -31.14
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.80
SVM decision value 0.61
SVM RNA-class probability 0.797501
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19004502 115 + 20766785
GAGAGUUUAACAGCAGGGAUGAAGAGGCAAGUAGAGUGCCAAUUACUGCUUCACUUACCUUUGAGAGUCCCAGCCAGUUGGCCCCGGAUAUAAGUCC---AGCAGUGACUCACUGAGC
..(((((..((.((.(((((..(((((.((((..((((........))))..)))).)))))....))))).(((....)))...((((....))))---.)).)))))))....... ( -35.80)
>DroSec_CAF1 102741 115 + 1
GAGAGUUUAACAGCAGGGAUGAAGAGGCAAGUAGAGUGCCAAUUACUGCUUCACUUACCUUUGAGAGUCCCAGCCAGUUGGCCCCGGAUUUAAGUCC---UGCAGUGACUCACUGAGC
..(((((..((.((((((....(((((.((((..((((........))))..)))).)))))..((((((..(((....)))...))))))...)))---))).)))))))....... ( -36.40)
>DroSim_CAF1 114451 115 + 1
GAGAGUUUAACAGCAGGGAUGAAGAGGCAAGUAGAGUGCCAAUUACUGCUUCACUUACCUUUGAGAGUCCCAGCCAGUUGGCCCCGGAUUUAAGUCC---UGCAGUGACUCACUGAGC
..(((((..((.((((((....(((((.((((..((((........))))..)))).)))))..((((((..(((....)))...))))))...)))---))).)))))))....... ( -36.40)
>DroEre_CAF1 105015 115 + 1
GAGAGUUUAACUGCGGGGAAGAAGAGGAAAGUGGAGUGCCAAUUACUGUUUCACUUACCUUUGAGAGUUCCUGCCAGUUGGCCCAGGAUUUAAGUCC---UGCAGUGACUCGCUGAGC
..(((((..(((((((((....(((((.(((((((..(........)..))))))).)))))......(((((((....)))..))))......)))---)))))))))))....... ( -39.40)
>DroYak_CAF1 106802 118 + 1
GAGAGUUUAACUGCAGGGAUGAAGAGGAAAGUAGAGUGCCAAUUACUGCUUCACUUACCUUUGAGUGUCCCUGCCAGUUGGCUCCGGAUUUAAGUCCUCCUGGAGUGACUCGCUGAGC
..(((((((((((((((((((.(((((.((((..((((........))))..)))).)))))...)))))))).))))))(((((((((....))))....))))))))))....... ( -45.60)
>consensus
GAGAGUUUAACAGCAGGGAUGAAGAGGCAAGUAGAGUGCCAAUUACUGCUUCACUUACCUUUGAGAGUCCCAGCCAGUUGGCCCCGGAUUUAAGUCC___UGCAGUGACUCACUGAGC
..(((((..((.((.(((((..(((((.((((.(((.((........))))))))).)))))....))))).(((....)))...((((....))))....)).)))))))....... (-31.06 = -31.14 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:04 2006