Locus 6041

Sequence ID 2R_DroMel_CAF1
Location 19,000,778 – 19,000,883
Length 105
Max. P 0.768303
window9682

overview

Window 2

Location 19,000,778 – 19,000,883
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 98.10
Mean single sequence MFE -24.46
Consensus MFE -23.80
Energy contribution -23.32
Covariance contribution -0.48
Combinations/Pair 1.09
Mean z-score -1.26
Structure conservation index 0.97
SVM decision value 0.52
SVM RNA-class probability 0.768303
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19000778 105 + 20766785
AAGGAGCAAUUAUGUGGAGCGUUUACUGCGAAAUGUGUGGCGAAUGCGUGCAAUUAAAAUGGGAUAUUUUACAUUAAGCAUGCAUAUUUAUUGAGUUCUGGAUAA
..(((((.....(((.(.((((((......)))))).).))).((((((((((((((((((...))))))).)))..)))))))).........)))))...... ( -22.00)
>DroSec_CAF1 99102 105 + 1
AAGGAGCAAUUAUGUGGAGCGUUUACUGCGAAAUGUGCGGCGAAUGCGUGCAAUUAAAAUGGGAUAUUUUACAUUAAGCAUGCAUAUUUAUUGAGUUCUGGAUAA
..(((((...........(((((..(((((.....)))))..)))))(((((.....((((..(....)..)))).....))))).........)))))...... ( -24.40)
>DroSim_CAF1 103714 105 + 1
AAGGAGCAAUUAUGUGGAGCGUUUACUGCGAAAUGUGCGGCGAAUGCGUGCAAUUAAAAUGGGAUAUUUUACAUUAAGCAUGCAUAUUUAUUGAGUUCUGGAUAA
..(((((...........(((((..(((((.....)))))..)))))(((((.....((((..(....)..)))).....))))).........)))))...... ( -24.40)
>DroEre_CAF1 101500 105 + 1
AAGGAGCAAUUAUGUGGAGCGUUUACUGCCAAAUGUGCGGCGAAUGCGUGCAAUUAAAAUGGGAUAUUUUACAUUAAGCAUGCAUAUUUAUUGAGUUCUGGAUAA
..(((((...........(((((..(((((....).))))..)))))(((((.....((((..(....)..)))).....))))).........)))))...... ( -24.00)
>DroYak_CAF1 103079 105 + 1
AAGGAGCAAUUACGUGGAGCGUUUACUGCGAAAUGUGCGGCGAAUGCGUGCAAUUAAAAUGGGAUAUUUUGCAUUAAGCAUGCAUAUUUAUGGAGUUCUGGAUAA
..(((((.....(((((((((((..(((((.....)))))..)))))(((((.....((((.((....)).)))).....))))).))))))..)))))...... ( -27.50)
>consensus
AAGGAGCAAUUAUGUGGAGCGUUUACUGCGAAAUGUGCGGCGAAUGCGUGCAAUUAAAAUGGGAUAUUUUACAUUAAGCAUGCAUAUUUAUUGAGUUCUGGAUAA
..(((((.....(((.(.((((((......)))))).).))).((((((((((((((((((...))))))).)))..)))))))).........)))))...... (-23.80 = -23.32 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:03 2006