Locus 6039

Sequence ID 2R_DroMel_CAF1
Location 18,997,156 – 18,997,263
Length 107
Max. P 0.500000
window9679

overview

Window 9

Location 18,997,156 – 18,997,263
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 86.82
Mean single sequence MFE -23.78
Consensus MFE -16.70
Energy contribution -17.82
Covariance contribution 1.12
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18997156 107 + 20766785
ACUUCCACAGCAGAUCGUAUCUCCUCUAUAUUUGUUGCGAUUUCUGGUUAGCCCUUGGGCUGCCAGAAUACAAAAGACCACUGACUUCCAACAACCAAUCUUUAAAU
........(((((((((((.(............).))))))(((((((.((((....)))))))))))............))).))..................... ( -23.40)
>DroSec_CAF1 95288 107 + 1
ACUUCCACAGCAGAUCGUAUCUCCUCUACAUUUGAUGCGAUUUCUGGUUAGCCCUUGGGCGGCCAGAAGACCAAGCACCACUGACUCCCAACUAUCAAUCUUUAAAU
.........((.(((((((((............)))))))))(((((((.(((....)))))))))).......))............................... ( -27.00)
>DroSim_CAF1 99893 107 + 1
ACUUCCACAGCAGAUCGUAUCUCCUGUACAUUUGUUGCGAUUUCUGGUUAGCCCUUGGGCGGCCAGAAUACCAAGGACCACUGACUCCCAACUACCAAUCUUUAAAU
...(((.((((((((.((((.....))))))))))))....((((((((.(((....)))))))))))......))).............................. ( -27.70)
>DroEre_CAF1 97970 107 + 1
ACUUCCAAAGCAGAUCGUAUCUCCGCCACAUUUGUUGCGAUUUCUGUUUGGCCCUUGGGCUGCCAAAAUAUAACAGACCACCGAAUUCCAGGCACAAAUCUUUAAAU
........(((((((.((.........)))))))))..(((((.(((((((...((((.(((...........)))....))))...))))))).)))))....... ( -20.20)
>DroYak_CAF1 99410 106 + 1
ACUUCCAAAGCAGAUCGUAUCUCUACUACAUUUGUUGCGAUUUCUGGUUAGCCCUUGGGCUGCCAAAAUAUGAAAGACCACUGACUUCCGACCGCAAAUCUUGAA-U
.....((((((((((.(((.......))))))))))(((((((.((((.((((....)))))))))))).((.(((........))).))..))).....)))..-. ( -20.60)
>consensus
ACUUCCACAGCAGAUCGUAUCUCCUCUACAUUUGUUGCGAUUUCUGGUUAGCCCUUGGGCUGCCAGAAUACAAAAGACCACUGACUUCCAACCACCAAUCUUUAAAU
..........(((((((((.(............).))))))(((((((.((((....)))))))))))............)))........................ (-16.70 = -17.82 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:00 2006