Locus 6038

Sequence ID 2R_DroMel_CAF1
Location 18,995,670 – 18,995,765
Length 95
Max. P 0.527505
window9678

overview

Window 8

Location 18,995,670 – 18,995,765
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.14
Mean single sequence MFE -24.68
Consensus MFE -7.28
Energy contribution -7.56
Covariance contribution 0.28
Combinations/Pair 1.33
Mean z-score -1.69
Structure conservation index 0.29
SVM decision value -0.01
SVM RNA-class probability 0.527505
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18995670 95 - 20766785
-----------U----GGUUAG-AAUUUAAUUUCUAAUCAAAAGUUAUUGGCUG--CGUUGCUGUGGCAU-CCGUGC-AAUA-----UCGUAGUUCAAUUACAGACUCUUCACAGCCUUA
-----------(----((((((-((......))))))))).........(((((--.(((((...((...-))..))-))).-----..(((((...)))))..........)))))... ( -22.60)
>DroSec_CAF1 93834 95 - 1
-----------U----GGUUAG-AAUUUAAUUUCUAAUCAAAAGUUAUUGGCUG--CGUUGCCGUGGCGU-CCGUGC-AAUA-----UCGUAGUUCAAUUACAGACUCUUCACACCCUUA
-----------(----((((((-((......)))))))))...((.((((((((--((((((((......-.)).))-))..-----.))))).))))).)).................. ( -22.90)
>DroEre_CAF1 96582 94 - 1
-----------A----GGUUAG-CACUUAAUUUCUAAUCAAAAGUUAUUGGCUG--CGUUGCCGUGGCAU-CCGUGC-CAUA-----UCGUAGUUCAAUUACGGACUCUUCGCAGCU-UA
-----------.----((((((-..........))))))..........(((((--((..(((((((((.-...)))-))).-----..(((((...))))))).)....)))))))-.. ( -26.20)
>DroYak_CAF1 96969 95 - 1
-----------A----GGUUAG-AAUUUAAUUUCUAAUCAAAAGUUAUUGACUG--CGUUGCCGUGGCAU-CCGUGC-AAUA-----UCGUAGUUCAAUUACAGACUCCUCACGGCCCCA
-----------.----((((((-((......))))))))....((.((((((((--((((((((......-.)).))-))..-----.))))).))))).)).................. ( -23.00)
>DroAna_CAF1 103491 120 - 1
UUCUAGCAUAGAGGUGAGUUACAGAUGGAAUUACUAAUCAAAAUUGAUUGGAUGGCAGUUGCCAUGGUUGGCAGUUUAAAUAAUUCCCUGUAGUUGAAUUGUAGAAUCUUAACAGCUUUA
..........(((((....(((((..((((((((((((((....))))))).......((((((....))))))......))))))))))))(((((..(.....)..))))).))))). ( -28.70)
>consensus
___________A____GGUUAG_AAUUUAAUUUCUAAUCAAAAGUUAUUGGCUG__CGUUGCCGUGGCAU_CCGUGC_AAUA_____UCGUAGUUCAAUUACAGACUCUUCACAGCCUUA
................((((((.((.....)).))))))..........(((((.....(((....)))....................(((((...)))))..........)))))... ( -7.28 =  -7.56 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:59 2006