Locus 6037

Sequence ID 2R_DroMel_CAF1
Location 18,995,533 – 18,995,642
Length 109
Max. P 0.604826
window9677

overview

Window 7

Location 18,995,533 – 18,995,642
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 64.47
Mean single sequence MFE -40.30
Consensus MFE -23.22
Energy contribution -24.50
Covariance contribution 1.28
Combinations/Pair 1.06
Mean z-score -1.21
Structure conservation index 0.58
SVM decision value 0.14
SVM RNA-class probability 0.604826
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18995533 109 - 20766785
AGGCAGCACGAAACGUGAGUCCACCCGCCAUCCGUUUGGGAUGGCUGUGCUGUGCUGGUCCGCUCGGUUGCCUCAUGGGUGUGUUCGUCGAUGCCAGGCCAAGAGCCUC
.((((..(((((((....)).((((((((((((.....)))))))...((((.((......)).))))........)))))..)))))...))))((((.....)))). ( -45.20)
>DroSec_CAF1 93722 84 - 1
CGGCAGCCAGAAACGUGAGUCCACCCGCCAUCCGGUUGGGAUGGCAGG-----GCUGGUCUGCUCGGCUGCCUCAUGCCUC----------------CCC----CCUCC
.(((((((.((...((.((.(((((((((((((.....))))))).))-----).))).))))))))))))).........----------------...----..... ( -39.50)
>DroEre_CAF1 96466 88 - 1
AGGCAGCCAGAAACGUGAGUCCACC-----UCCGCUUGGGCUG----------GCUGGUCUGCUCGGCUGCCUCGCGGAUGUGUUUGCGGAUGCCACGCC------CCC
.((((.((....((....)).(((.-----(((((..((((.(----------(((((.....)))))))))).))))).))).....)).)))).....------... ( -36.20)
>consensus
AGGCAGCCAGAAACGUGAGUCCACCCGCCAUCCGCUUGGGAUGGC_G______GCUGGUCUGCUCGGCUGCCUCAUGGAUGUGUU_G__GAUGCCA_GCC_____CCCC
.(((((((....((....))......(((((((.....)))))))........((......))..)))))))..................................... (-23.22 = -24.50 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:58 2006