| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,991,122 – 18,991,213 |
| Length | 91 |
| Max. P | 0.783200 |
| Location | 18,991,122 – 18,991,213 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 83.21 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -14.25 |
| Energy contribution | -14.12 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.783200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18991122 91 + 20766785 ---UUACAUCGCUGAUUUAUGCUUGAACCAUUAUUAUAUUAAUUUUGUCUUUUUUUUUACCCAGUGAAUACAUGUUGGGUGCGGCAAGUGAGUU ---.....(((((......((((.((...((((......))))....))........(((((((((....)))..)))))).)))))))))... ( -13.40) >DroSec_CAF1 89215 88 + 1 CGCUUACAUCUCUGAUUUAUGUUUGAACCAUAUUUAUAAUCAU------UUUUUUUGCACCCAGUGAAUACAUGUUGGGUGCGGCAAGUGAGUU .((((((.....(((((((((.......)))).....))))).------.....((((((((((((....)))..)))))))))...)))))). ( -21.30) >DroSim_CAF1 93874 89 + 1 CGCUUACAUCGCUGAUUUAUGUUUGAACCAUAUUUAUAAUCAUA-----UUUUUUUGCACCCAGUGAAUACAUGUUGGGUGCGGCAAGUGAGUU .((((((...(((((((((((.......)))).....))))...-----.......((((((((((....)))..))))))))))..)))))). ( -22.10) >DroYak_CAF1 92457 86 + 1 UCCUUAUGUCCCUUAUUCAUUCUUGAACUAUAUUCAUAUUCAU--------UUUUUGUACCCAGUGAAUACUUGUUGGGUGCGGCAAGUGAGUU ....((((.......((((....)))).......))))(((((--------((.((((((((((..(....)..)))))))))).))))))).. ( -23.84) >consensus CGCUUACAUCGCUGAUUUAUGCUUGAACCAUAUUUAUAAUCAU______UUUUUUUGCACCCAGUGAAUACAUGUUGGGUGCGGCAAGUGAGUU ..(((((........((((....))))...........................(((((((((..(......)..)))))))))...))))).. (-14.25 = -14.12 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:53 2006