| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,989,269 – 18,989,371 |
| Length | 102 |
| Max. P | 0.635299 |
| Location | 18,989,269 – 18,989,371 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 97.39 |
| Mean single sequence MFE | -25.54 |
| Consensus MFE | -23.87 |
| Energy contribution | -23.99 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18989269 102 + 20766785 CUCUUAAGCACUUCAUAAGAAAUUUUCAAACACAAUUUGAAUUUUGGUGCGUGGGCUUAAUGGAGCCACCGUAGAAGUGAAAUCUCAUAUUGAUGAGACAAC ........((((((......((..((((((.....))))))..))..((((..(((((....)))))..))))))))))...((((((....)))))).... ( -27.50) >DroSec_CAF1 87366 102 + 1 CUCUUAAGCUCUUCGUAAGAAAUUUUCCAACACAAUUUGAAUUUUGGUGCGUGGGCUUAAUGGAGCCACCGUAGAAGUGAAAUCUCAUAUUGAUGAGACAAC (((((((((((..((((.(((((((.............)))))))..)))).)))))))..)))).(((.......)))...((((((....)))))).... ( -23.92) >DroSim_CAF1 92021 102 + 1 CUCUUAAGCACUUCGUAAGAAAUUUUCCAACACAAUUUGAAUUUUGGUGCGUGGGCUUAAUGGAGCCACCGUGGAAGUGAAAUCUCAUAUUGAUGAGACAAC ........((((((....)))...((((.((.(((........)))))(((..(((((....)))))..))))))))))...((((((....)))))).... ( -25.20) >consensus CUCUUAAGCACUUCGUAAGAAAUUUUCCAACACAAUUUGAAUUUUGGUGCGUGGGCUUAAUGGAGCCACCGUAGAAGUGAAAUCUCAUAUUGAUGAGACAAC ........((((((....(((((((.............)))))))..((((..(((((....)))))..))))))))))...((((((....)))))).... (-23.87 = -23.99 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:52 2006