Locus 6032

Sequence ID 2R_DroMel_CAF1
Location 18,985,212 – 18,985,311
Length 99
Max. P 0.651852
window9669

overview

Window 9

Location 18,985,212 – 18,985,311
Length 99
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 86.21
Mean single sequence MFE -28.12
Consensus MFE -21.10
Energy contribution -21.34
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.75
SVM decision value 0.25
SVM RNA-class probability 0.651852
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18985212 99 - 20766785
CUUGGCCUGGCUUUAC------------GGCUUUUUUCUGCUUUUCCGGCGACGAGCCUGCAUAUUUCAUGCAAUUAAGAAAAAUGAGCCAGCUACACACACCGCAUAGCA
..((((.((((((...------------(((((.((.(((......))).)).)))))(((((.....)))))............))))))))))................ ( -25.10)
>DroSec_CAF1 83339 98 - 1
CUUGGCCUGGCUUUCC------------GGCUUU-CCCUGCUUUUCCGGCGACAAGCCUGCAUAUUUCAUGCAAUUAAGAAAAAUGAGCCAGCUACACACGCCGCAUAGCA
..((((.((((((...------------((((((-(.(((......))).)).)))))(((((.....)))))............)))))))))).....((......)). ( -26.20)
>DroSim_CAF1 88008 98 - 1
CUUGGUCUGGCUUUCC------------GGCUUU-CCCUGCUUUUCCGGCGACAAGCCUGCAUAUUUCAUGCAAUUAAGAAAAAUGAGCCAGCUACACACGCCGCAUAGCA
..(((.(((((((...------------((((((-(.(((......))).)).)))))(((((.....)))))............)))))))))).....((......)). ( -26.20)
>DroEre_CAF1 87085 107 - 1
CUUGGCCUGGCUUGCCGACUU---UUCCGGCUUU-UCCAGCUUUUCCGGCUGCGAGCCUGCAUAUUUCAUGCAAUUAAGAAAAAUGAGGCAGCUACACACACCGCAUAGCA
....(((((((((((((....---...))))...-..(((((.....))))).)))))(((((.....))))).............)))).((((..(.....)..)))). ( -31.30)
>DroYak_CAF1 86729 110 - 1
CUUCGCUUGGCUUUUCUGCCUUUCUUCUGGCGUU-UCUGGCUUUUCCGGCGACGAGCCUGCAUAUUUCAUGCAAUUAAGAAAAAUGAGCCAGCUACACACACCGCAUAGCA
....(((..((......(((........)))((.-.(((((((....(((.....)))(((((.....)))))............)))))))..)).......))..))). ( -31.80)
>consensus
CUUGGCCUGGCUUUCC____________GGCUUU_UCCUGCUUUUCCGGCGACGAGCCUGCAUAUUUCAUGCAAUUAAGAAAAAUGAGCCAGCUACACACACCGCAUAGCA
..((((.((((((................((........))(((((.(((.....)))(((((.....))))).....)))))..))))))))))................ (-21.10 = -21.34 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:50 2006