Locus 6030

Sequence ID 2R_DroMel_CAF1
Location 18,973,045 – 18,973,154
Length 109
Max. P 0.683707
window9666

overview

Window 6

Location 18,973,045 – 18,973,154
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 80.65
Mean single sequence MFE -24.77
Consensus MFE -17.91
Energy contribution -19.10
Covariance contribution 1.19
Combinations/Pair 1.13
Mean z-score -1.67
Structure conservation index 0.72
SVM decision value 0.31
SVM RNA-class probability 0.683707
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18973045 109 - 20766785
UGCACAUACAUAGUACUUUUCAUUGGCGGUGAACACCACUUCAGGUGCGUAUCCUUGCAUAUUUGUUUACCGUGCAAUCCUGGGAGUCCUCGUUCCCCAAUUAACAUUC
(((((.......((.(........)))((((((((((......)))(((......)))......)))))))))))).....(((((......)))))............ ( -25.70)
>DroSec_CAF1 71184 108 - 1
UGCACACA-AUAGUACUUUUCAAUGGUGGUGAACACCUCCUCAGGUGGGCAUCCUUGCACAUUUGUUUACCGUGCAAUACUGGGAGUCCUCGUUCCCCAAUUAACAUUC
(((((...-.....(((.......)))((((((((((.((...)).))(((....))).....))))))))))))).....(((((......)))))............ ( -28.50)
>DroSim_CAF1 75111 108 - 1
UGCACACA-AUAGUACUUUUCAAUGGUGGUGAACACCUCUCCAGGUGGGUAUCCUUGCACAUUUGUUUACCGUGCAAUCCUGGGAGUCCUCGUUCCCCAAUUAACAUUC
(((((...-.....(((.......)))(((((((((((....))))..(((....)))......)))))))))))).....(((((......)))))............ ( -25.50)
>DroEre_CAF1 74772 85 - 1
UGCACAUG-AUGCUACUUUUCAA---------------------AU--GCAUCCUUGCACAUUUGUUUGCUGUGCAGUCCCGGGACUCCUCGUUCCCCAAUUAACAUUC
((((((.(-((((..........---------------------..--)))))...(((........))))))))).....(((((.....)))))............. ( -19.40)
>consensus
UGCACACA_AUAGUACUUUUCAAUGGUGGUGAACACCUCUUCAGGUGGGCAUCCUUGCACAUUUGUUUACCGUGCAAUCCUGGGAGUCCUCGUUCCCCAAUUAACAUUC
(((((...................((((.....))))....((((((.(((....))).))))))......))))).....(((((......)))))............ (-17.91 = -19.10 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:47 2006