Locus 6029

Sequence ID 2R_DroMel_CAF1
Location 18,971,532 – 18,971,632
Length 100
Max. P 0.599445
window9665

overview

Window 5

Location 18,971,532 – 18,971,632
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 94.40
Mean single sequence MFE -20.88
Consensus MFE -18.99
Energy contribution -19.02
Covariance contribution 0.03
Combinations/Pair 1.07
Mean z-score -1.08
Structure conservation index 0.91
SVM decision value 0.13
SVM RNA-class probability 0.599445
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18971532 100 - 20766785
GGUCAAGGCUUCUUGCCAAUUUUAAUUAGGCCAUAAUUAAAUGAUCAAACGGUGAGGCAACGGCAUAACUGAUAAGAUAUAUAUUUAGAUAUGAUUCUCU
(((((.(((.....)))...((((((((.....)))))))))))))...((((...((....))...))))...(((..(((((....)))))..))).. ( -20.30)
>DroSec_CAF1 69716 100 - 1
GGUCAAGGCUUCUUGCCAAUUUUAAUUAGGCCAUAAUUAAAUGAUCAAACGGUAAGGCAACGGCAUAACUGAUAAGAUAUAUAUUUAGAUGUGAUUCUCU
(((((.(((.....)))...((((((((.....)))))))))))))...((((...((....))...))))...(((..(((((....)))))..))).. ( -19.20)
>DroSim_CAF1 73646 100 - 1
GGUCAAGGCUUCUUGCCAAUUUUAAUUAGGCCAUAAUUAAAUGAUCAAACGGUAAGGCAACGGCAUAACUGAUAAGAUAUAUAUUUAGAUAUGAUUCUCU
(((((.(((.....)))...((((((((.....)))))))))))))...((((...((....))...))))...(((..(((((....)))))..))).. ( -19.20)
>DroEre_CAF1 73284 100 - 1
GGUCAAGGCUUCUUGCCAAUUUUAAUUAGGCCAUAAUUAAAUGAUCAAACGGUGAGGCAACGGCAUAACUGAUAAGAUACAUAUUUAGAUAUGAUUCGGU
(((((.(((.....)))...((((((((.....)))))))))))))...((((...((....))...))))....((..(((((....)))))..))... ( -22.00)
>DroYak_CAF1 72751 100 - 1
GGUCAAGGCUUCUUGCCAAUUUUAAUUAGGCCAUAAUUAAAUGAUCAAACGGUGAGGCAACGGCAUAACUGAUAAGAUACAUAUUUAGAUAUGAGUCUGU
(((((.(((.....)))...((((((((.....)))))))))))))...((((...((....))...))))...((((.(((((....))))).)))).. ( -25.00)
>DroAna_CAF1 80298 100 - 1
GGUCAAGGCUUUUUGCCAAUUUUAAUUAGGCUAUAAUUAAAUGAUCAAACGGUGAGCCGGAGGCACAACUGAUAAGAUACAUAUUUAGAUAUAAUUCCCU
(((((.(((.....)))...((((((((.....)))))))))))))...((((..(((...)))...))))............................. ( -19.60)
>consensus
GGUCAAGGCUUCUUGCCAAUUUUAAUUAGGCCAUAAUUAAAUGAUCAAACGGUGAGGCAACGGCAUAACUGAUAAGAUACAUAUUUAGAUAUGAUUCUCU
(((((.(((.....)))...((((((((.....)))))))))))))...((((...((....))...))))....((..(((((....)))))..))... (-18.99 = -19.02 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:46 2006