Locus 6028

Sequence ID 2R_DroMel_CAF1
Location 18,953,441 – 18,953,540
Length 99
Max. P 0.999318
window9664

overview

Window 4

Location 18,953,441 – 18,953,540
Length 99
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -25.38
Consensus MFE -10.56
Energy contribution -10.88
Covariance contribution 0.32
Combinations/Pair 1.14
Mean z-score -3.39
Structure conservation index 0.42
SVM decision value 3.51
SVM RNA-class probability 0.999318
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18953441 99 - 20766785
GUGCUGCCUUUUGUUGACAAG-GCAACACUCGGAGAAAGUGGAAUAUAAAUUAUAUACUUCACUU-AUUCAUCUAACGCAACAAAGGUAUCACUUUGAAUC
(((.(((((((.((((.(..(-....).....(((.(((((((.((((.....)))).)))))))-.))).......)))))))))))).)))........ ( -26.60)
>DroSec_CAF1 51989 99 - 1
GUGCUGCCU-UUGUUGACAGG-GAAACACUCGGAAAAAGUGGAAAAUAAAUUAUAUACUUCACUUCAUUCAUCUAACGCAACAAAGGUAUCACUUUGAAUC
(((.(((((-((((((.(..(-....)....(((..(((((((..(((.....)))..)))))))..))).......)))))))))))).)))........ ( -28.00)
>DroSim_CAF1 55333 100 - 1
GUGCUGCCUUUUGUUGACAAG-GAAACACUCGGAAAAAGUGGAAAAUAAAUUAUAUACUUCACUUCAUUCAUCUAACGCAACAAAGGUAUCACUUUGAAUC
(((.(((((((.((((.(..(-....)....(((..(((((((..(((.....)))..)))))))..))).......)))))))))))).)))........ ( -24.40)
>DroEre_CAF1 53643 90 - 1
GUGCUGC-UUUUGUUGACAAGGGAAACACUCGGAGAAAGUAGA-UAUACGUAAUAUACUUCACUG-AUUCAUCUCAGGCAACAAAAGUAGCAC--------
(((((((-((((((((.(..((((.....((((.(((.(((..-...........)))))).)))-)....))))..))))))))))))))))-------- ( -31.32)
>DroYak_CAF1 54331 75 - 1
GUGCUGC-UUUUGUUGACAAU-GAAACACUCGGAGAAAGUGG-------GAAAUACAUUUC-----------------CAACAAAGGAAACACUUUGAAUC
(((...(-(((((((......-....((((.......))))(-------((((....))))-----------------)))))))))...)))........ ( -16.60)
>consensus
GUGCUGCCUUUUGUUGACAAG_GAAACACUCGGAGAAAGUGGAAAAUAAAUUAUAUACUUCACUU_AUUCAUCUAACGCAACAAAGGUAUCACUUUGAAUC
(((.(((((.((((((......((.....)).....(((((..............)))))..................))))))))))).)))........ (-10.56 = -10.88 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:45 2006