Locus 6026

Sequence ID 2R_DroMel_CAF1
Location 18,943,359 – 18,943,461
Length 102
Max. P 0.899683
window9661

overview

Window 1

Location 18,943,359 – 18,943,461
Length 102
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 81.36
Mean single sequence MFE -23.24
Consensus MFE -16.10
Energy contribution -15.94
Covariance contribution -0.16
Combinations/Pair 1.07
Mean z-score -2.10
Structure conservation index 0.69
SVM decision value 1.01
SVM RNA-class probability 0.899683
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18943359 102 - 20766785
ACAUAUGCGGAAAAUGUGGAUGGAAACGGGAAUAAACAGCGAGUACGUGGGAAAAACCACGUAAGUGCACCAAGAGAAAUACUUACAACUAUGC--GCUAAUUA
......(((.(.....(((.((....))..........(((..(((((((......)))))))..))).))).(((.....))).......).)--))...... ( -25.00)
>DroSec_CAF1 42098 100 - 1
ACAUAUGCGGAAAAUGUGGAUGGAAACGGGAAUAAACAGCGAGUACGUGGGA--AACCACGGCAGUGCACCAAGAGAAAUACUUACAAUUAUGU--GGCAAUUA
.....(((((....(((...((....))...)))....(((....(((((..--..)))))....))).))............((((....)))--)))).... ( -24.70)
>DroSim_CAF1 45308 90 - 1
ACAUAUGCGGAAAAUGUGGAUGGAAACGGGAAUAAACAGCGAGUACGUGGGA--AACCACGGCAGUGCACCAAGAGAAAUACUUAC------------CAAUUA
.(((((.......)))))...(....)((.........(((....(((((..--..)))))....)))...((((....).))).)------------)..... ( -22.20)
>DroEre_CAF1 43936 93 - 1
ACAUAUGCGGAAAAUGUGGAUGGAAACGCAAAUACACAGCGAGUACGUGGGA--AACCAUGGCAGUGCAUCCAGAGAAAUAUCUAUG---AUCUUGAU------
.(((....(((...((((..((....))......))))(((....(((((..--..)))))....))).)))(((......))))))---........------ ( -23.20)
>DroYak_CAF1 44257 92 - 1
ACAUAUGCGGAAAAUGUGGAUGAAAACGCGAAUAAACAGCGAGUACGUGGUA--AACCACGGCAGUGCACCUAGAGAAACAUCUACC--UAUCU--AU------
........(((....(((((((....(((.........))).((.(((((..--..)))))))................))))))).--..)))--..------ ( -21.10)
>consensus
ACAUAUGCGGAAAAUGUGGAUGGAAACGGGAAUAAACAGCGAGUACGUGGGA__AACCACGGCAGUGCACCAAGAGAAAUACUUACA__UAUCU__AU_AAUUA
.(((((.......)))))..((....))..........(((....(((((......)))))....))).................................... (-16.10 = -15.94 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:42 2006