| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,937,152 – 18,937,251 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 18,937,152 – 18,937,251 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 87.56 |
| Mean single sequence MFE | -30.47 |
| Consensus MFE | -24.59 |
| Energy contribution | -25.85 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18937152 99 + 20766785 CGCAGAGUUUAGCUGCAAUUAAAGAGGGCUUAACGAACGGCAAGGGGGCGG-----------CACCAUCCAGCCAAUUCAGCUAUCGUUAAUCAGGCAGCUAAUUAAAGC .((.....((((((((.(((((.((.((((....(((.(((..(((((...-----------..)).))).)))..))))))).)).)))))...)))))))).....)) ( -27.90) >DroSec_CAF1 35875 99 + 1 CGCAGAGUUUAGCUGCAAUUAAAGAGGGCUUAACGAAUGGCAAGGGGGCGG-----------CACCAUCCAGCUAUUCGAGCUAUCGUUAAUCAGGCGGCUAAUUAAAGC .((.....((((((((.(((((.((.((((...((((((((..(((((...-----------..)).))).)))))))))))).)).)))))...)))))))).....)) ( -34.00) >DroSim_CAF1 39144 99 + 1 CGCAGAGUUUAGCUGCAAUUAAAGAGGGCUUAACGAACGGCAAGGGGGCGG-----------CACCAUCCAGCUAGUCGAGCUAUCGUUAAUCAGGCGGCUAAUUAAAGC .((.....((((((((.(((((.((.((((..((....(((..(((((...-----------..)).))).))).))..)))).)).)))))...)))))))).....)) ( -29.70) >DroYak_CAF1 37957 106 + 1 CGCAGAGUUUAGCUGCAAUUAAAGAGGGCUCAACGAGUGGAAAGGGGGCGGGAAGGGGGCGUUACCAUCC----AAUCCAGCUAUCGUUAAUCAGGCGGCUAAUUAAAGC .((.....((((((((.(((((.((.((((....((.((((..((..(((.........)))..)).)))----).)).)))).)).)))))...)))))))).....)) ( -30.30) >consensus CGCAGAGUUUAGCUGCAAUUAAAGAGGGCUUAACGAACGGCAAGGGGGCGG___________CACCAUCCAGCUAAUCCAGCUAUCGUUAAUCAGGCGGCUAAUUAAAGC .((.....((((((((.(((((.((.((((...(((.((((...(((..((.............)).))).)))).))))))).)).)))))...)))))))).....)) (-24.59 = -25.85 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:41 2006