Locus 6024

Sequence ID 2R_DroMel_CAF1
Location 18,936,947 – 18,937,043
Length 96
Max. P 0.585637
window9659

overview

Window 9

Location 18,936,947 – 18,937,043
Length 96
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 80.21
Mean single sequence MFE -15.92
Consensus MFE -9.19
Energy contribution -10.83
Covariance contribution 1.64
Combinations/Pair 1.10
Mean z-score -2.13
Structure conservation index 0.58
SVM decision value 0.10
SVM RNA-class probability 0.585637
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18936947 96 - 20766785
GAAAACGUUAGCAUGCCAAAUAGUACAUUGCCGUA----UAUACAUACAUAUAGUAUUUAUGUGCAUACAAUCAUACAUGUGUGAACAUAAACAACAACA
......(((.(((((.(((........)))..(((----((((.((((.....)))).)))))))...........)))))...)))............. ( -14.80)
>DroSec_CAF1 35657 92 - 1
GAAAACGUUAGCAUGCCAAAUAGUACAUUGCUGUAUGUAUGUACAUACAUAUAGUAU--------AUACAAACGUACAGGUGCGAACAUAAACAACAACA
......(((.((((((......))......((((((((.((((.((((.....))))--------.)))).)))))))))))).)))............. ( -22.30)
>DroSim_CAF1 38940 78 - 1
GAAAACGUUAGCAUGCCAAAUAGUACAUUACUGUA--------------UAUAGUAU--------AUACAAACGUACAUGUGCGAACAUAAACAACAACA
......(((.............(((((((((((((--------------(((...))--------)))))...))).)))))).............))). ( -10.67)
>consensus
GAAAACGUUAGCAUGCCAAAUAGUACAUUGCUGUA____U_UACAUACAUAUAGUAU________AUACAAACGUACAUGUGCGAACAUAAACAACAACA
......(((.((((((......))....((((((((((((....)))))))))))).......................)))).)))............. ( -9.19 = -10.83 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:40 2006