Locus 6022

Sequence ID	2R_DroMel_CAF1
Location	18,933,038 – 18,933,130
Length	92
Max. P	0.998927

overview

Window 5

Location	18,933,038 – 18,933,130
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	92.41
Mean single sequence MFE	-31.72
Consensus MFE	-27.20
Energy contribution	-27.68
Covariance contribution	0.48
Combinations/Pair	1.08
Mean z-score	-2.61
Structure conservation index	0.86
SVM decision value	3.29
SVM RNA-class probability	0.998927
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18933038 92 + 20766785
CUGGCGUAAAUGGGGCUUUUGUUUCGCAAUUAUGCCGGGCAGCCGGGCAGCCGGGCAUUCAGAUCCAGAUUUGUUUGCUCGACUUUUUGCUG
(((((((((.((..((....))..))...))))))))).((((..((.((.((((((..(((((....)))))..)))))).))))..)))) ( -35.60)
>DroSec_CAF1 32132 84 + 1
CUGGCGUAAAUGGGGCUUUUGUUUCGCAAUUACGCCGGGCA--------GCCGGGCAUUCAGAUCCAGAUUUGUUUGCUCGACUUUUUGCUG
(((((((((.((..((....))..))...))))))))).((--------((((((((..(((((....)))))..)))))).......)))) ( -33.41)
>DroSim_CAF1 35121 84 + 1
CUGGCGUAAAUGGGGCUUUUGUUUCGCAAUUACGCCGGGCA--------GCCGGGCAUUCAGAUCCAGAUUUGUUUGCUCGACUUUUUGCUG
(((((((((.((..((....))..))...))))))))).((--------((((((((..(((((....)))))..)))))).......)))) ( -33.41)
>DroEre_CAF1 33080 82 + 1
CUGGCGUAAAUGGGGCUUUUGUUUCGCAAUUACG--GGGAA--------GCCGGGCAUUCAGAUCCAGAUUUGUUUGCUCGACUUUUUGCCG
..(((((((.((..((....))..))...)))).--(((((--------(.((((((..(((((....)))))..)))))).))))))))). ( -29.30)
>DroYak_CAF1 33836 82 + 1
CUGGCGUAAAUGGGGCUUUUGUUUCGCAAUUACG--GGGCA--------GCCGGGCACUCGGAUCCAGAUUUGUUUGCUCGACUUUUUGCCG
..((((.....((((((...((..((......))--..)))--------)))(((((..(((((....)))))..)))))..))...)))). ( -26.90)
>consensus
CUGGCGUAAAUGGGGCUUUUGUUUCGCAAUUACGCCGGGCA________GCCGGGCAUUCAGAUCCAGAUUUGUUUGCUCGACUUUUUGCUG
(((((((((.((..((....))..))...))))))))).............((((((..(((((....)))))..))))))........... (-27.20 = -27.68 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:36 2006