Locus 6021

Sequence ID 2R_DroMel_CAF1
Location 18,929,798 – 18,929,897
Length 99
Max. P 0.772543
window9654

overview

Window 4

Location 18,929,798 – 18,929,897
Length 99
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.69
Mean single sequence MFE -35.55
Consensus MFE -25.01
Energy contribution -26.93
Covariance contribution 1.92
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.70
SVM decision value 0.53
SVM RNA-class probability 0.772543
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18929798 99 + 20766785
GCUGCUGGUACUGGCCGUACUCCUGGCUGGGGUACAGCACCAUGUUCUGCACGGGCAUGGGCUGCAGCAGCGUCUGCAAUCAAAGAAA---UA----CGUU-GAUAA
(((((((...(..((((......))))..)....((((.((((((((.....))))))))))))))))))).......(((((.(...---..----).))-))).. ( -41.10)
>DroVir_CAF1 43857 103 + 1
GACGCUCGUAGUGGGCAUAUUCCUGACUAGGAUAGAGCAGCAUAUUCUGUACGGGCAUCGGCUGCAGCAGAGUCUGCAAGG-AAUCAACAGUA--GAUAUU-UAAAA
...(((.(((((.((......((((((.((((((........)))))))).))))..)).))))))))...((((((....-........)))--)))...-..... ( -24.80)
>DroPse_CAF1 29068 103 + 1
GCUGCUGGUACUGGCCGUACUCGUGGCUGGGGUAGAGCAGCAUAUUCUGCACUGGCAUCGGUUGCAGCAUCGUCUGAAAAGAACGGAA---UUCAGAUUUU-AAUUU
((((((.(..(..((((......))))..)..)..)))))).....((((((((....))).)))))....(((((((..........---)))))))...-..... ( -33.00)
>DroSec_CAF1 28965 100 + 1
GCUGCUGGUACUGGCCGUACUCCUGGCUGGGGUAGAGCACCAUGUUCUGGACGGGCAUGGGCUGCAGCAGCGUCUGCAAGGAAG-AAAAG-AA----CAUU-GAUAA
(((((((...(..((((......))))..).....(((.((((((((.....))))))))))).))))))).(((.......))-)....-..----....-..... ( -37.80)
>DroSim_CAF1 31976 98 + 1
GCUGCUGGUACUGGCCGUACUCCUGGCUGGGGUAGAGCACCAUGUUCUGGACGGGCAUGGGCUGCAGCAGCGUCUGCAAGGAAA-AAA---UA----UAUU-GGUAC
(((((((...(..((((......))))..).....(((.((((((((.....))))))))))).))))))).(((....)))..-...---..----....-..... ( -37.50)
>DroEre_CAF1 29916 102 + 1
GCUGCUGGUACUGGCCGUACUCCUGGCUGGGGUAGAGCACCAUGUUCUGGACGGGCAUGGGCUGCAGCAGCGUCUGCAACGAUACCAAAG-GC----CAUUUAAUUU
(((((((...(..((((......))))..).....(((.((((((((.....))))))))))).)))))))((((.............))-))----.......... ( -39.12)
>consensus
GCUGCUGGUACUGGCCGUACUCCUGGCUGGGGUAGAGCACCAUGUUCUGGACGGGCAUGGGCUGCAGCAGCGUCUGCAAGGAAA_AAA___UA____CAUU_GAUAA
(((((((...(((((((......))))))).....(((.((((((((.....))))))))))).))))))).................................... (-25.01 = -26.93 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:35 2006