Locus 6017

Sequence ID 2R_DroMel_CAF1
Location 18,902,090 – 18,902,183
Length 93
Max. P 0.569250
window9649

overview

Window 9

Location 18,902,090 – 18,902,183
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.58
Mean single sequence MFE -31.60
Consensus MFE -23.13
Energy contribution -24.72
Covariance contribution 1.59
Combinations/Pair 1.17
Mean z-score -2.42
Structure conservation index 0.73
SVM decision value 0.07
SVM RNA-class probability 0.569250
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18902090 93 + 20766785
----CGGUGGCCUGCUCUUGAUGUACGAGUGCAAUUUGCCAGCCGAUGGCAGUUGCAUCUGCGACUUUGAUGGAAAACCCAUUCCAUUAAUUGACCC
----(((((((.(((.((((.....)))).)))....)))).)))..(((((((((....))))).(((((((((......))))))))).)).)). ( -31.90)
>DroSec_CAF1 6423 93 + 1
----CGGUGGCCUGCACUUGAUGUACGAGUGCAAUUUGCCAGCCGAUGGCAGUUGCAUCUGCGACUUUGAUGGAAAACCCAUUCCAUUAAUUGACCG
----(((((((.((((((((.....))))))))....)))).)))..(((((((((....))))).(((((((((......))))))))).)).)). ( -36.80)
>DroSim_CAF1 7538 93 + 1
----CGGUGGCCUGCACUUGAUGUACGAGUGCAAUUUGCCAGCCGAUGGCAGUUGCAUCUGCGACUUUGAUGGAAAACCCAUUCCAUUAAUUGACCG
----(((((((.((((((((.....))))))))....)))).)))..(((((((((....))))).(((((((((......))))))))).)).)). ( -36.80)
>DroEre_CAF1 7591 93 + 1
----CGCUGGCCUGCACUUGAUGUACGAGUGCAAUUUGCCAGCCGAUGGCUGUUGCAUCUGCGACUUUGAUGGAAAACCCAUCCCAUUAAUUGAGCG
----.((((((.((((((((.....))))))))....)))))).(((((..(((((....)))))...(((((.....))))))))))......... ( -37.20)
>DroYak_CAF1 7596 93 + 1
----UGGUGGCCUGCACUUGAUGUACGAGUGUAAUUUGCCAACCGAUGGCAGUUGCAUUUGCGACUUUGAUGGAAAAGCCAUCCCAUUAAUUGACCG
----.((((((.((((((((.....))))))))....))).)))(((((.((((((....))))))..(((((.....))))))))))......... ( -32.60)
>DroAna_CAF1 7452 91 + 1
CCUACGGUGGCGAAUACUUGAUGACCGAUGACAAUUUCCCGGCC------AGAAGCAUCUGUGACUUUGAUAGAAAACCCAUCCACUUAAUUGCCAG
.......((((((.((...((((.(((............)))..------.......(((((.......))))).....))))....)).)))))). ( -14.30)
>consensus
____CGGUGGCCUGCACUUGAUGUACGAGUGCAAUUUGCCAGCCGAUGGCAGUUGCAUCUGCGACUUUGAUGGAAAACCCAUCCCAUUAAUUGACCG
.....((((((.((((((((.....))))))))....)))).))(((((..(((((....)))))...(((((.....))))))))))......... (-23.13 = -24.72 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:30 2006