Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,899,446 – 18,899,551 |
Length | 105 |
Max. P | 0.903994 |
Location | 18,899,446 – 18,899,551 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -33.52 |
Consensus MFE | -23.14 |
Energy contribution | -23.83 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.05 |
Mean z-score | -1.94 |
Structure conservation index | 0.69 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18899446 105 + 20766785 AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAGAGAGCGCAAAGCGUAAAUACAAGUAUAUAACGUCCGGUGUGG ((((((((((((((.(..((..(((........)))..))..).))))).))))))))).......((((...((((..(((....)))...))))...)))).. ( -34.40) >DroSec_CAF1 3938 89 + 1 AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAGAGGACGCAAAGCGUAAAUACAAGUAU---------------- ((((((((((((((.(..((..(((........)))..))..).))))).))))))))).......((((...))))............---------------- ( -30.30) >DroSim_CAF1 4890 105 + 1 AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAAGGACGCAAAGUGUAAAUACAAGUAUAUAACGUCCGGUGUGG ((((((((((((((.(..((..(((........)))..))..).))))).))))))))).....(((((....(((((........)))))..)))))....... ( -35.70) >DroEre_CAF1 4937 105 + 1 AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAUGGCAGAAAAGCGUAAACACACGGAUAUAACGUCCAGUGCGG ((((((((((((((.(..((..(((........)))..))..).))))).)))))))))......((......)).....(.(((((((.....)))).))).). ( -35.50) >DroYak_CAF1 4901 105 + 1 AGAUCCUGUCGUGCUUAGGGGCAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAAGGCAGCACAGCGUAAAUACAAGGAUAUAACGUCCUGUGUGG ((((((((((((((....((.((((........)))).))....))))).)))))))))......((......))....(((((.((((.....))))))))).. ( -41.60) >DroMoj_CAF1 5308 94 + 1 GGAGCCGGUGGUGCUGAGCGGCAGCUUCUCAAUGCUGGCAAUGUGCAUGUGCAGAAUCUGAAAUGAGGGCGAGUCGUUAAUAUAGACAC-----------UAGUA ...((..(((...(((((((((.(((.((((((((.........))))...(((...)))...)))))))..))))))....))).)))-----------..)). ( -23.60) >consensus AGAUCCUGUCGUGCUCAAGGGAAGCUUCUCAAUGCUGGCCACGUGCAUGUGCAGGAUCUGAAAAGGACGCAAAGCGUAAAUACAAGUAUAUAACGUCC_GUGUGG ((((((((((((((....((..(((........)))..))....))))).))))))))).............................................. (-23.14 = -23.83 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:29 2006