| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,898,947 – 18,899,051 |
| Length | 104 |
| Max. P | 0.545179 |
| Location | 18,898,947 – 18,899,051 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.34 |
| Mean single sequence MFE | -30.36 |
| Consensus MFE | -18.32 |
| Energy contribution | -19.40 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18898947 104 - 20766785 GCAGCUCGCGAUUCCGCUCCAAGGGGCGGCUGCCAGUGCUCACCUAUCUGCACAACAACAAGGUUAGGCGAAGAUAUACA-UAACUCAUAUUAUCAGCA--A-------ACUUA (((((.(((...(((.......)))))))))))..((((..........)))).......(((((..((((.(((((...-......))))).)).)).--)-------)))). ( -24.90) >DroPse_CAF1 3675 101 - 1 GUAGUUCGCGCUUCCGCUCCAAGGGACGGCUGCCGGCGCUCACCUAUCUGCACAACAACAAGGUGGGUGUCAACU-----UCAGC----AUUGUUUGGAUAAUUAGC----UGA ..((((.(.((..(((..(....)..)))..)))(((((((((((...((.....))...)))))))))))))))-----(((((----(((((....)))))..))----))) ( -32.50) >DroSec_CAF1 3437 106 - 1 GCAGCUCGCGAUUCCGCUCCAAGGGGCGGCUGCCGGCGCUCACAUAUCUGCACAACAACAAGGUGAGGCGAGGAUAUACA-UAACUUCUAUUAUCACCAGUA-------ACCUA ((.(((.(((...((((((....)))))).))).)))))......................(((((....((((......-....))))....)))))....-------..... ( -28.10) >DroSim_CAF1 4389 106 - 1 GCAGCUCGCGAUUCCGCUCCAAGGGGCGGCUGCCGGCGCUCACCUAUCUGCACAACAACAAGGUGAGGCGAGCAUUUACA-UAACUUCUAUUAUCACCAGUU-------ACCUA ...((((((....((((((....)))))).........(((((((...((.....))...))))))))))))).......-(((((............))))-------).... ( -33.30) >DroEre_CAF1 4427 109 - 1 GCAGUUCGCGGUUCCGCUCCAAGGGGCGGCUCCCAGCGCUCACCUAUCUGCACAACAACAAGGUGAUGCUAGAAUA-----GAACUGCUAUUAUCAGCAUAAAGAGCAAACAUA ((((((((.((..((((((....))))))..)))((((.((((((...((.....))...))))))))))......-----)))))))........((.......))....... ( -38.30) >DroYak_CAF1 4381 109 - 1 GCAGCUCGCGCUUCCGCUCCAAAGGCCGCCUCCCAGCGCUCACCUAUCUGCACAACAACAAGGUGAUGCUAGCAUU-----UAACUCCUUAUAUCAGCAGAAAGAGCAGACAUA ...(((((((((...((.((...))..)).....))))).......(((((........((((.((((....))))-----.....))))......)))))..))))....... ( -25.04) >consensus GCAGCUCGCGAUUCCGCUCCAAGGGGCGGCUGCCAGCGCUCACCUAUCUGCACAACAACAAGGUGAGGCGAGAAUA_____UAACUCCUAUUAUCAGCAGAA_______ACAUA ((.(((.(((...((((((....)))))).))).))).(((((((...((.....))...)))))))))............................................. (-18.32 = -19.40 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:28 2006