Locus 6014

Sequence ID 2R_DroMel_CAF1
Location 18,894,738 – 18,894,851
Length 113
Max. P 0.718733
window9646

overview

Window 6

Location 18,894,738 – 18,894,851
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 89.79
Mean single sequence MFE -36.80
Consensus MFE -28.00
Energy contribution -29.75
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.76
SVM decision value 0.39
SVM RNA-class probability 0.718733
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18894738 113 - 20766785
GCAGUAGGAGUCGGUGCAGUUUUCUGUUUCUUGGCCUGCUUAGCCAGCUUCUUCGCCUCCCGCUCGGCCAUUAUCUGGUCACGAGUCUUCUCCGUGGCCAAUGGAUCCACAGC
((((..((((.(((.((((....))))...(((((.......))))).....))).))))..)).((((((....((((((((((....)).))))))))))))..))...)) ( -35.70)
>DroSim_CAF1 124 113 - 1
GCAGUAGGAGUCGGUGCAGUUUUGUGUUUCUUGGCCUGCUUGGCCAGCUUCUUCGCCUCCCGCUCGGCCAUUAUCUGGUCACGAGUCUUCUCCGUGGCCACUGCAUCCACUGC
(((((.(((.....((((((...........(((((.((..(((..........)))....))..)))))......(((((((((....)).))))))))))))))))))))) ( -41.20)
>DroEre_CAF1 182 111 - 1
GCAGUAGCAGUCGCAGCAUUUUUCAGUUUUUUAGCCUGUUUAGCCAGCUUCUUCGCUUCCCGCUCGGCAAUUAUCUGGUCACGAGUCUUCUCCGUGGCCACUGCAUCC--UGC
(((((....((((.(((......(((.........))).......(((......)))....)))))))........(((((((((....)).))))))))))))....--... ( -30.40)
>DroYak_CAF1 123 111 - 1
GCAGUAGAAGUCGUAGCGUUUUUCUGUUUCUUGGCCUGCUUGGCCAGCUUCUUUGCCUCCCGCUCGGCCAUUACCUGGUCACGAGUCUUCUCCGUGGCCACUGCAUCC--UGC
(((((....((((.((((.............(((((.....)))))((......))....))))))))........(((((((((....)).))))))))))))....--... ( -39.90)
>consensus
GCAGUAGGAGUCGGAGCAGUUUUCUGUUUCUUGGCCUGCUUAGCCAGCUUCUUCGCCUCCCGCUCGGCCAUUAUCUGGUCACGAGUCUUCUCCGUGGCCACUGCAUCC__UGC
(((((....((((.(((..............(((((.....)))))((......)).....)))))))........(((((((((....)).))))))))))))......... (-28.00 = -29.75 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:27 2006