Locus 6013

Sequence ID 2R_DroMel_CAF1
Location 18,892,848 – 18,892,961
Length 113
Max. P 0.857364
window9645

overview

Window 5

Location 18,892,848 – 18,892,961
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.65
Mean single sequence MFE -41.41
Consensus MFE -21.24
Energy contribution -24.32
Covariance contribution 3.08
Combinations/Pair 1.12
Mean z-score -2.69
Structure conservation index 0.51
SVM decision value 0.81
SVM RNA-class probability 0.857364
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18892848 113 - 20766785
ACUAAGCUU-GCCAGUCGCUCCAUUACCGCGAAAAGAUGAAGUUCAUCGCAGCUGGAUUAGCUCUUCUGGUCUGCUCCAUCCAGUUGGGUGAAGG------AGCACCUGGUCACCUGCUA
....(((.(-(((((..(((((.(((((.......((((.....)))).(((((((((.(((...........)))..)))))))))))))).))------)))..)))).))...))). ( -45.90)
>DroSec_CAF1 7910 113 - 1
ACUAAGCUU-GCCAGUCGCUCCAUUACCACGAAAAGAUGAAGUUCAUCGCAGCUGGAUUAGCUCUUCUGGUCUGCUCCAUCCAGCUGGGUGAAGG------AGCACUUGGCAAACUGCUG
....(((((-((((((.(((((.(((((.......((((.....)))).(((((((((.(((...........)))..)))))))))))))).))------))))).))))))...))). ( -49.20)
>DroSim_CAF1 7882 113 - 1
ACUAAGCUU-GCCAGUCGCUCCAUUACCACGAAAAGAUGAAGUUCAUCGCAGCUGGAUUAGCUCUUCUGGUCUGCUCCAUCCAGCUGGGUGAAGG------AGCACUUGGCAACCUGCUG
....(((((-((((((.(((((.(((((.......((((.....)))).(((((((((.(((...........)))..)))))))))))))).))------))))).))))))...))). ( -49.20)
>DroEre_CAF1 7780 120 - 1
UUUAUGCUUUUCCAGCCGCUCCAUUACCACGGAAAGAUGAAGUUCAUCGCAGCAGUACUUGCUCUGCUAGCCUGCUCAAUUUAUCUGGCUGAAGGAGAAGGAGAAUAUGGCCAGCUGCUG
.....(((...(((....((((.((.((.(((..(((((((.......(((((((........))))).))........)))))))..)))..)).)).))))....)))..)))..... ( -33.06)
>DroYak_CAF1 6202 117 - 1
AGUAAGCUUCGACAGUCGCUCCAUUACCGCGAAAUGAUGAAGUUCAUCGCAACAGGACUCGCUCUGCUAGCCUACUCAAUCCAUCUUGCUGAAGGAG---GAGGAUUUGGCCAGCUGCUG
....(((((((.((.((((.........))))..)).)))))))................((...(((.(((.....(((((.((((.(....).))---))))))).))).))).)).. ( -29.70)
>consensus
ACUAAGCUU_GCCAGUCGCUCCAUUACCACGAAAAGAUGAAGUUCAUCGCAGCUGGAUUAGCUCUUCUGGUCUGCUCCAUCCAGCUGGGUGAAGG______AGCACUUGGCCACCUGCUG
....(((...(((((..(((((.(((((.......((((.....)))).(((((((((..((...........))...)))))))))))))).))......)))..))))).....))). (-21.24 = -24.32 +   3.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:26 2006