Locus 6012

Sequence ID 2R_DroMel_CAF1
Location 18,890,485 – 18,890,597
Length 112
Max. P 0.664587
window9644

overview

Window 4

Location 18,890,485 – 18,890,597
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -16.18
Consensus MFE -13.90
Energy contribution -14.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.86
SVM decision value 0.28
SVM RNA-class probability 0.664587
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18890485 112 - 20766785
CUUACAAGACUUAACA--------GAGCACUCAUAUCUCAUUCGCCAUAUUCAAAGUGUUAUGUAUGCCCCCAACUUACACUUUCCUCAAUGUUCGAUAAGAUAAACAAUUCCGAUCCCA
................--------.........(((((...(((.(((....(((((((...((.((....))))..))))))).....)))..)))..)))))................ ( -11.30)
>DroSec_CAF1 4848 112 - 1
CUUACAACAGUUAACA--------GAGCACUCAUAUCUCAUUCGCCAUAUUCAAAGUGUUAUGUAUGCCCCCAACUUACACUUUCCACAAUGUGCGAUAAGAUAAACAAUUCCGAUCCCA
.........(((....--------((....)).(((((...(((((((....(((((((...((.((....))))..))))))).....))).))))..))))))))............. ( -17.20)
>DroSim_CAF1 4841 112 - 1
CUUACAACAGUUAACA--------GAGCACUCAUAUCUCAUUCGCCAUAUUCAAAGUGUUAUGUAUGCCCCCAACUUACACUUUCCACAAUGUGCGAUAAGAUAAACAAUCCCGAUCCCA
.........(((....--------((....)).(((((...(((((((....(((((((...((.((....))))..))))))).....))).))))..))))))))............. ( -17.20)
>DroEre_CAF1 4704 120 - 1
CUUACAAGAAUUAACAGAGCACACCAGCACUCAUUUCUCAUUCGCCAUAUUCAAAGUGUUAUGUAUACCCCGCACUUACACUUUCCUCAAUGUGCGAUAAGAUAAACAAUUUCGAUCCCA
.......(((........((......)).......(((...(((((((....(((((((..(((.......)))...))))))).....))).))))..)))........)))....... ( -17.10)
>DroYak_CAF1 1630 112 - 1
CUUACAAGAAGUAACA--------CAGCACUCAUAUCUCAUUCGCCAUAUUCAAAGUGUUAUGUAUGCCCCGCACUUACACUUUCCUCAAUGUGCGAUAAGAUAAACAAUUUCGAUCCCA
.......(((((....--------..)).....(((((...(((((((....(((((((..(((.......)))...))))))).....))).))))..)))))......)))....... ( -18.10)
>consensus
CUUACAAGAAUUAACA________GAGCACUCAUAUCUCAUUCGCCAUAUUCAAAGUGUUAUGUAUGCCCCCAACUUACACUUUCCUCAAUGUGCGAUAAGAUAAACAAUUCCGAUCCCA
.................................(((((...(((((((....(((((((...((.........))..))))))).....))).))))..)))))................ (-13.90 = -14.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:25 2006