Locus 6010

Sequence ID 2R_DroMel_CAF1
Location 18,875,848 – 18,875,968
Length 120
Max. P 0.829971
window9642

overview

Window 2

Location 18,875,848 – 18,875,968
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.92
Mean single sequence MFE -45.68
Consensus MFE -39.60
Energy contribution -41.48
Covariance contribution 1.88
Combinations/Pair 1.05
Mean z-score -1.44
Structure conservation index 0.87
SVM decision value 0.71
SVM RNA-class probability 0.829971
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18875848 120 + 20766785
GCUGUGGCAGGUCUUUGGCCAAAUGGUGCUUGCCCUGCUGCAGAGGCGCUCCAAUCCGUCCAUGGCCACGCCACCAAGCGUCAGUCAGGCGGAUUUCACCAGAUGGUUGUAUGAGCUCUA
.(((..(((((.(....(((....)))....).)))))..))).((.((((.((((((.((.((((.((((......))))..))))))))))))..(((....))).....)))).)). ( -46.30)
>DroSec_CAF1 8304 120 + 1
GCUGUGGCAGGUCUUUGGCCAAAUGGUGCUAGCCCUGCUGCAGAGGCGCUCCAAUCCGUCAGUGGCCACGCCACCAAGCGUCAGCCAGGCGGAUUUUACCAAAUGGUUGUAUGAAAUCUA
.(((..(((((.((...(((....)))...)).)))))..)))..((.....((((((((..((((.((((......))))..))))))))))))..(((....))).)).......... ( -43.60)
>DroSim_CAF1 8652 120 + 1
GCUGUGGCAGGUCUUUGGCCAAAUGGUGCUAGCCCUGCUGCAGAGGCGCUCCAAUCCGUCAGUGGCCACGCCACCAAGCGUCAGCCAGGCGGAUUUUACCAAAUGGUUGUAUGAAAUCUA
.(((..(((((.((...(((....)))...)).)))))..)))..((.....((((((((..((((.((((......))))..))))))))))))..(((....))).)).......... ( -43.60)
>DroEre_CAF1 8154 120 + 1
GCUGUGGCAGGUCUUUGGCCAAAUGGUGCUAACCCUGCUGCAGAGGCGCACUAAUCCGUCCAUGGCCACGCCACCAAGCGUCAGCCAGGCGGAUUUCACCAGCUGUUUGUAUGAGCUCGU
.(((..(((((...((((((.....).))))).)))))..))).(((.....((((((.((.((((.((((......))))..))))))))))))......)))((((....)))).... ( -45.50)
>DroYak_CAF1 8282 120 + 1
GCUGUGGCAGGUGUUUGGCCAAAUGGUGCUAGCCCUGCUGCAGAGGCGCUCAAAUCCGUCCGUGGAUAUGCCACCCAGCGUCAGCCAGGCGGAUUUCACCAACUGGUUGUAUGAGCUCUA
.(((..(((((.(((..(((....)))...))))))))..))).((.(((((....(((..((((.....))))...))).(((((((..((......))..)))))))..))))).)). ( -49.40)
>consensus
GCUGUGGCAGGUCUUUGGCCAAAUGGUGCUAGCCCUGCUGCAGAGGCGCUCCAAUCCGUCCGUGGCCACGCCACCAAGCGUCAGCCAGGCGGAUUUCACCAAAUGGUUGUAUGAGCUCUA
.(((..(((((.((...(((....)))...)).)))))..))).((.((((.((((((((..((((.((((......))))..))))))))))))..(((....))).....)))).)). (-39.60 = -41.48 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:23 2006