| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,864,920 – 18,865,030 |
| Length | 110 |
| Max. P | 0.926392 |
| Location | 18,864,920 – 18,865,030 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -32.61 |
| Consensus MFE | -21.64 |
| Energy contribution | -23.56 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.926392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18864920 110 + 20766785 ----------UACGGCUCAAAUCGGCCGACAAAACAAAACAAUCCGAUUAGAGUGGCGUGUGGUGUGUGGCUCGAAAUACCAAACAUUUAAUCAGCUUGUAUAGAAACGGGCACACUAAU ----------..(.((((.((((((..................)))))).)))).).(((((((((..........))))).............((((((......)))))))))).... ( -26.27) >DroSec_CAF1 40332 118 + 1 CGGAAA--UAUACGGCUCAAAUCGGCCGACAAAACAAAACAAUCCGAUUAGAGUGGCGUGUGGUGUGUCGCUCGAAAUACCACACAUUUUAUCAGCUUGUAUAAAAACGGGGACAUUGAU ......--((((((((((.((((((..................)))))).))))...(((((((((.((....)).)))))))))............)))))).....(....)...... ( -31.17) >DroSim_CAF1 39749 118 + 1 CGGAAA--UAUACGGCUCGAAUCGGCCGACAAAACAAAACAAUCCGAUUAGUGUGGCGUGUGGUGUGUCGCUCGAAAUACCACACAUUUAAUCAGCUUGUAUAAAAACGGCGACAUUGAU ((((..--.....((((......))))(......).......))))((((((((.(((((((((((.((....)).)))))))))............(((......))))).)))))))) ( -34.30) >DroEre_CAF1 42549 119 + 1 CAGAUAUAUAUACGGCUGAAAUCGGCCGACAAAACAAAACAAUGGGAUUGGUGUGGCGUGCGGUGCGUAGCUGCAAAUACCACACCCUAUAUCGGCUCAACCAAAUGUGGUCACACUA-C ..((((((....((((((....)))))).....................(((((((..((((((.....))))))....))))))).))))))((.....))....(((....)))..-. ( -38.60) >DroYak_CAF1 41822 118 + 1 CAGAUA--UAUACGGCUGAAAUCGGCCGACAAAACAAAACAAUCCGAUUAGUGUGGCUGGCGCAGGAUAGCUGGAAAUACCACACUCUUUAUCAGCUCACCCAAAAGUGGUCACACUAAU ......--....((((((....))))))..................(((((((((((((.(...((..((((((.((...........)).))))))...))....)))))))))))))) ( -32.70) >consensus CAGAAA__UAUACGGCUCAAAUCGGCCGACAAAACAAAACAAUCCGAUUAGUGUGGCGUGUGGUGUGUAGCUCGAAAUACCACACAUUUUAUCAGCUUGUAUAAAAACGGGCACACUAAU ............(((((......)))))..................((((((((((((((((((((..........)))))))))............(((......)))))))))))))) (-21.64 = -23.56 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:13 2006