Locus 6002

Sequence ID 2R_DroMel_CAF1
Location 18,862,962 – 18,863,082
Length 120
Max. P 0.651830
window9624

overview

Window 4

Location 18,862,962 – 18,863,082
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -40.46
Consensus MFE -33.32
Energy contribution -34.08
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -1.42
Structure conservation index 0.82
SVM decision value 0.25
SVM RNA-class probability 0.651830
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18862962 120 - 20766785
CCGCUGCACGGCGUACACCACCGUCGAUCCGCUGCCAAUCCCCAGAAUCUUCGUAUCCUCAGUCACCCACUGGUCCACCGCCGUGCGGGCCGCCGUCUUCUUGGCCGCGUCCAGCGCAAU
.((((((((((((........((..(((...(((........))).)))..)).....(((((.....))))).....))))))))((((.((.(((.....))).)))))))))).... ( -39.00)
>DroSec_CAF1 38360 120 - 1
CCGCUGCACGGCAUACACCACCGUCGAUCCGCUGCCAAUCCCCAGAAUCUUCGUGUCCUCAGUCACCCACUGGUCCACCGCCGUGCGGGCCGCCGUCUUCUUGGCCGCGUCCAGCGCAAU
.(((((((((((..........(..(((...(((........))).)))..)(((..(.((((.....)))))..))).)))))))((((.((.(((.....))).)))))))))).... ( -40.60)
>DroSim_CAF1 37825 120 - 1
CCGCUGCACGGCAUACACCACCGUCGAUCCGCUGCCAAUCCCCAGAAUCUUCGUGUCCUCAGUCACCCACUGGUCCACCGCCGUGCGGGCCGCCGUCUUCUUGGCCGCGUCCAGCGCAAU
.(((((((((((..........(..(((...(((........))).)))..)(((..(.((((.....)))))..))).)))))))((((.((.(((.....))).)))))))))).... ( -40.60)
>DroEre_CAF1 40463 120 - 1
CCGCUGCACGGCGAACACCACGGUGGACCCACUGCCUAUCCCCAGAAUCUUCGUGUCCUCCGUUACCCACUGAUCCACCGCCGUGCGGGCCGCCGUCUUCUUGGCCGCGUCCAAAGCAAU
..(((((((((((.......((((((.....(((........))).......(((........)))))))))......))))))))((((.((.(((.....))).))))))..)))... ( -40.92)
>DroYak_CAF1 39661 120 - 1
GCGCUGCACGGCGUACACCACGGUGGACCCACUGCCAAUACCCAGAAUCUUCGUGUCCUCCGUCACCCACUGAUCCACAGCCGUGCGGGCCGCCGUCUUCUUGGCCGCGUCCAGAGCAAU
..((((((((((........((((((.....(((........))).......(((.(....).))))))))).......)))))))((((.((.(((.....))).))))))..)))... ( -41.16)
>consensus
CCGCUGCACGGCGUACACCACCGUCGAUCCGCUGCCAAUCCCCAGAAUCUUCGUGUCCUCAGUCACCCACUGGUCCACCGCCGUGCGGGCCGCCGUCUUCUUGGCCGCGUCCAGCGCAAU
..((.(((((((..........(..(((...(((........))).)))..)(((...(((((.....)))))..))).)))))))((((.((.(((.....))).))))))...))... (-33.32 = -34.08 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:05 2006