| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,859,491 – 18,859,598 |
| Length | 107 |
| Max. P | 0.602622 |
| Location | 18,859,491 – 18,859,598 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.09 |
| Mean single sequence MFE | -34.02 |
| Consensus MFE | -24.67 |
| Energy contribution | -25.86 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18859491 107 - 20766785 -ACA--UACAAUAAAAGAC---------GUAUCAAUUAGUCCUAGAACUUGGCCUUGGAGCACUCGAAAGGAGUGCAGCAGGGAUAGCAGUCCGGGGCCUUGAUGCAGCUCAGUCCGAA -...--.............---------(((((((..(((......))).(((((((((((((((.....)))))).((.......))..))))))))))))))))............. ( -34.30) >DroSec_CAF1 33668 116 - 1 -ACA--UACAAGAAAAGACCACAUCAAUGUAUCAUUUAGUCCUAGAACUUGGCCUUGGAGCACUCGAAGGGAGUGCAGCAGGGAUAGCAGUCCGGGGCCUUGAUGCAGCUCAGUCCGAA -...--..........(((........(((((((((((....))))....(((((((((((((((.....)))))).((.......))..))))))))).))))))).....))).... ( -35.82) >DroSim_CAF1 34168 116 - 1 -ACA--UACAAGAAAAGACCACAUCAACGUAUCAUUUAGUCCUAGAACUUGGCCUUGGAGCACUCGAAGGGAGUGCAGCAGGGAUAGCAGUCCGGGGCCUUGAUGCAGCUCAGUCCGAA -...--......................((((((((((....))))....(((((((((((((((.....)))))).((.......))..))))))))).))))))............. ( -34.00) >DroEre_CAF1 37305 119 - 1 UGCGAGUGCAACAAAAUACCAGGUCAUCGCAUCGUUUAGGCCUAAAACUUGGCUUUGGAGCACUCGAAGGGAGUGCAGCAGGGAUAGCAAUCCGGCGCCUUGAUGCAGCUCAGCCCGAA ..(((((((..((((...((((((....((.........)).....)))))).))))..)))))))..(((((((((.(((((...((......)).))))).)))).))...)))... ( -40.60) >DroYak_CAF1 34338 106 - 1 -GCA---UAAACAAAGCACAA---------AACAUUUAGGCCUAAAACUUGGCUUUGGAGCACUCGAAGGGAGUGCAGCAGGGAUAGCAAUCCGGAGCCUUGAUGCAGCUCAGUCCGAA -(((---(.............---------....((((....)))).(..(((((((((((((((.....)))))).((.......))..)))))))))..)))))............. ( -30.30) >DroAna_CAF1 31383 105 - 1 -ACA--UACAAG----GACUAUGCCACAGU-UCAA------UUACAUCUUGACCUUGCCGCACUCGUAGGGCGUGCAGCAGGGAUAGCAGUCAGGGGCCUUGAUGCAGCUCAGCCCGAA -...--......----((((..((......-((((------.......))))((((((.((((.(.....).)))).))))))...))))))..((((..(((......)))))))... ( -29.10) >consensus _ACA__UACAAGAAAAGACCA__UCA__GUAUCAUUUAGUCCUAGAACUUGGCCUUGGAGCACUCGAAGGGAGUGCAGCAGGGAUAGCAGUCCGGGGCCUUGAUGCAGCUCAGUCCGAA ............................((((((................(((((((((((((((.....)))))).((.......))..))))))))).))))))............. (-24.67 = -25.86 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:03 2006