Locus 5998

Sequence ID 2R_DroMel_CAF1
Location 18,851,074 – 18,851,189
Length 115
Max. P 0.689774
window9620

overview

Window 0

Location 18,851,074 – 18,851,189
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.87
Mean single sequence MFE -36.07
Consensus MFE -12.52
Energy contribution -12.25
Covariance contribution -0.27
Combinations/Pair 1.35
Mean z-score -2.08
Structure conservation index 0.35
SVM decision value 0.33
SVM RNA-class probability 0.689774
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18851074 115 - 20766785
AGUUUGAAGAACCUCUGAAGAAAGCCCUCUAUCAGGGCAAAAUGAACCAGAAAUGGCAGAAAGAUUGCUCCAGCGAUUUUAUCGAGGCUAUAG-AGAAACACUUAUAGC-C---UACUUG
...((((......((((......(((((.....)))))........(((....)))))))((((((((....)))))))).))))((((((((-........)))))))-)---...... ( -33.60)
>DroPse_CAF1 30460 120 - 1
AGUUCGAGGAGCCCCUCCAGAAGGCCCUCGAUAUGGUUAAGGUGAACCAGCAAUGGCAAAGGGAUUGCUCCGGCGAUUUCAGCCAGGCUCUGGGGGAGGCAUAUCUAAGAACCAUACACA
.((((..((((((((((((((..(((...(...(((((......))))).)..((((...(..(((((....)))))..).))))))))))))))).)))...)))..))))........ ( -47.20)
>DroSec_CAF1 25243 115 - 1
AAUUUGAAGAACCUCUGAAGAAAGCCAUCUAUCAGGGCAAAAUGAACCAGAAAUGGCAGAAAGAUUGCUCCGGCGAUUUUAUCGAAGCCAUAG-AGAAAUACUUAUAGC-A---UACUCA
......(((...(((((((((......))).))))))...............(((((.((((((((((....)))))))).))...)))))..-.......))).....-.---...... ( -22.50)
>DroEre_CAF1 28870 118 - 1
AGUUUGAAGAACCUCUCCAGAAAGCGCUUCAUCAGGGCAAAAUGAACCAGAAAUGGCAGACAGAUUGCUCCAGCGAUUUUAUCGACGCUAUGG-AGAAACACUUAUAAGCAGC-UUCCCA
.((((((((....((((((...((((........((((((..((..(((....)))....))..)))).))..((((...)))).)))).)))-)))....))).)))))...-...... ( -30.50)
>DroAna_CAF1 23794 119 - 1
AGUUUGAGGUGCCUCUGGAGAAGGCCCUCAGCCUGGCCAAGACAAACCAGCAGUGGCAAAAGGAGUGCUCCGGGGACUUCAGUCAGGCCCUAA-GAAAACGUAUCUAAGAGGUCUACACU
....((((((.((.((((((.((((.....)))).((((...(......)...))))..........))))))))))))))((.(((((((.(-((.......))).)).)))))))... ( -38.80)
>DroPer_CAF1 30570 119 - 1
AGUUCGAGGAGCCCCUCCAGAAAGCCCUCGAUAUGGUGAAGGUGAACCAGCAAUGGCAAAGGGAUUGCUCCGGCGAUUUCAGCCAGGCUCUGG-GGAGGCAUAUCUAAGAACCAUACACA
.((((..((((((.(((((((..(((...(...((((........)))).)..((((...(..(((((....)))))..).))))))))))))-)).)))...)))..))))........ ( -43.80)
>consensus
AGUUUGAAGAACCUCUCCAGAAAGCCCUCGAUCAGGGCAAAAUGAACCAGAAAUGGCAAAAAGAUUGCUCCGGCGAUUUCAGCCAGGCUAUAG_AGAAACACAUAUAAGAA_C_UACACA
..(((..((.....))...)))((((....................(((....)))....((((((((....)))))))).....))))............................... (-12.52 = -12.25 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:00 2006