Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,850,036 – 18,850,130 |
Length | 94 |
Max. P | 0.922004 |
Location | 18,850,036 – 18,850,130 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 93.17 |
Mean single sequence MFE | -15.65 |
Consensus MFE | -14.87 |
Energy contribution | -15.31 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.34 |
Structure conservation index | 0.95 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.922004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18850036 94 + 20766785 UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUCGGAUUAGCAUUAAUCAUCAUCUCCGGGCGAUUGCC ........(((((((...........(((((((((......))))))))).......(((((..................)))))))))))).. ( -16.87) >DroSec_CAF1 24192 91 + 1 UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUAGGAUUAGCUUU---CAUCAUCUCCGGGCGAUUGCC ..((((((((((((...)))))....(((((((((......))))))))).....)))))))...((..(---(.((......))..))..)). ( -15.50) >DroSim_CAF1 24444 91 + 1 UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUCGGAUUAGCUUU---CAUCAUCUCCGGGCGAUUGCC ........(((((((...........(((((((((......))))))))).......(((((........---.......)))))))))))).. ( -17.06) >DroEre_CAF1 27847 91 + 1 UUUUCUAUUAAUUGUUUUAAUUUCAAUUUAGCAUGCAACAACGUGCUUAACUCUCAAUCGGAUUAGCUUU---CAUCAUCUCCGGGCGAUUGAC .......((((((((..............((((((......))))))..........(((((........---.......))))))))))))). ( -14.66) >DroYak_CAF1 24380 91 + 1 UUUUCUAUUAAUUGUUUUAAUUUCAAUUUAGCAUGCUCCAACGUGCUUAACUCUCAAUCGGAUUAGCUUU---CAUCAUCUCCGGGCAAUUGGC .......((((((((..............((((((......))))))..........(((((........---.......))))))))))))). ( -14.16) >consensus UUUUCUAUUAAUUGUAUCAAUUUCAAUUUAGCAUGCUCCACCGUGCUAAACUCUCAAUCGGAUUAGCUUU___CAUCAUCUCCGGGCGAUUGCC ........(((((((...........(((((((((......))))))))).......(((((..................)))))))))))).. (-14.87 = -15.31 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:59 2006