| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,845,089 – 18,845,196 |
| Length | 107 |
| Max. P | 0.538421 |
| Location | 18,845,089 – 18,845,196 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.14 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -19.70 |
| Energy contribution | -19.32 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18845089 107 - 20766785 -----AAGCAAGCGGAAAACAGGAGACAAAUAGCCCGUGGAAGGGCUAAAAAGUGCCAUUGUU-UGGGCCUCAAAUUGAUAGCGCGUGUGCAAAUUUCUGGCUUU-UG--UUCC-UU -----((((((..((...((.(....)...((((((......))))))....)).)).)))))-)(((((..(((((....(((....))).)))))..))))).-..--....-.. ( -29.40) >DroPse_CAF1 24996 98 - 1 ----AAAGGAC----------GUCGAAAAAUAGCCCCUGGAAGGGCUGAAGUGUCCCAUUGU--UGGGCUUCAAAUUGAUAGCGCGUGUGCAAAUUUCUUGCCUUUUC--UUCC-UG ----..((((.----------(((((.....(((((......)))))((((...((((....--))))))))...))))).(((....))).................--.)))-). ( -25.70) >DroEre_CAF1 22986 108 - 1 -----AAGAAAGCGGAAAACAGGAGACAAAUAGCCCGUAGAAGGGCUAAAAAGUGGCAUUGUUUUGGGCCUCAAAUUGAUAGCGCGUGUGCAAAUUUCUGGCUUU-UG--UUUC-UU -----((((((.(((((..((((((.(((.((((((......))))))....(.(((..........))).)...)))...(((....)))...))))))..)))-))--))))-)) ( -30.60) >DroYak_CAF1 19388 112 - 1 UAAAAAAGCAAGCGGAAAACAGGAGACAAAUAGCCCGUAGAAGGGCUAAAAAGUGGCAUUGUU-UGGGCCUCAAAUUGAUAGCGCGUGUGCAAAUUUCUGGCUUU-UG--UUCC-UU ...((((((...((((((((.(....)...((((((......))))))....)).((((....-((.((.((.....))..)).)).))))...)))))))))))-).--....-.. ( -28.80) >DroAna_CAF1 19026 115 - 1 UUCGAAUGAAAGCGGCAAACGGAGGACAAAUAGCCCGUAGAAGGGCUAAAAUGCCCUAUUGUU-UGAGCCUCAAAUUGAUAGCGCGUGUGCAAAUUUCAGGCUCU-UGAUUUCCCUG ...(((..(.((.((((...(.....)...((((((......))))))...)))))).)..))-)((((((.(((((....(((....))).))))).)))))).-........... ( -33.90) >DroPer_CAF1 25125 98 - 1 ----AAAGGAC----------GGCGAGAAAUAGCCCCUGGAAGGGCUGAAGUGUCCCAUUGU--UGGGCUUCAAAUUGAUAGCGCGUGUGCAAAUUUCUUGCCUUUUC--UUCC-UG ----..((((.----------(((((((((((((((......)))))((((...((((....--)))))))).........(((....)))..)))))))))).....--.)))-). ( -34.00) >consensus ____AAAGAAAGCGGAAAACAGGAGACAAAUAGCCCGUAGAAGGGCUAAAAAGUCCCAUUGUU_UGGGCCUCAAAUUGAUAGCGCGUGUGCAAAUUUCUGGCUUU_UG__UUCC_UG ..............................((((((......)))))).................(((((..(((((....(((....))).)))))..)))))............. (-19.70 = -19.32 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:54 2006