Locus 5993

Sequence ID 2R_DroMel_CAF1
Location 18,842,498 – 18,842,592
Length 94
Max. P 0.780429
window9610

overview

Window 0

Location 18,842,498 – 18,842,592
Length 94
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 89.08
Mean single sequence MFE -31.15
Consensus MFE -27.58
Energy contribution -27.30
Covariance contribution -0.28
Combinations/Pair 1.22
Mean z-score -1.60
Structure conservation index 0.89
SVM decision value 0.56
SVM RNA-class probability 0.780429
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18842498 94 - 20766785
CCGGGCUAAGAACCAACCAAAUUUUGCCGGCCGCAUCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGC------CACCGCCCGGA
((((((.......................(((((.........)))))(((.((.....((((((..........))))))))------.))))))))). ( -34.30)
>DroSec_CAF1 16527 94 - 1
CCGGGCUAAGAACCAACCAACUUUUGCUGGCCGCAUCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGC------CACCGCUCGGA
((((((.......................(((((.........)))))(((.((.....((((((..........))))))))------.))))))))). ( -31.30)
>DroSim_CAF1 16650 94 - 1
CCGGGCUAAGAACCAACCAACUUUUGCUGGCCGCAUCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGC------CACCGCCCGGA
((((((.......................(((((.........)))))(((.((.....((((((..........))))))))------.))))))))). ( -34.30)
>DroEre_CAF1 20414 90 - 1
CCGGGCUAAGAACCA----ACUUUUGCUGGCCGCAUCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGC------CACCAGCCGGA
((((((.(((.....----.)))..))..((((((........(((((((.......)))))))...........))))))..------......)))). ( -29.71)
>DroYak_CAF1 16894 90 - 1
CCGGGCUAAGAACCA----ACUUUUGCUGGCCGCAUCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGC------CACCACCCGGA
(((((..........----..........(((((.........)))))(((.((.....((((((..........))))))))------.))).))))). ( -30.30)
>DroAna_CAF1 16325 96 - 1
CCGGACUAAGAACCA----ACUUUUGCUGGCCGCAUCAUAAAAGCGGCUGCCGCAAUAUGCUGCGUCUUCAAUUCUGCAGCAAUUCUGCCCCCUUCCGCC
.((((...((((...----....((((.((((((.........))))))...))))..(((((((..........))))))).)))).......)))).. ( -27.00)
>consensus
CCGGGCUAAGAACCA____ACUUUUGCUGGCCGCAUCAUAAAAGCGGCGGUCGCAAUCUGCUGCGUCUUCAUUUCUGCGGCGC______CACCGCCCGGA
(((((..................((((.((((((..(......)..))))))))))..(((((((..........)))))))............))))). (-27.58 = -27.30 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:51 2006