| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,835,396 – 18,835,494 |
| Length | 98 |
| Max. P | 0.660776 |
| Location | 18,835,396 – 18,835,494 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -15.16 |
| Energy contribution | -17.08 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18835396 98 + 20766785 ---AAAGUAUUUCCAUACAUUUUGUGUGGGAGUGCGGUCCUUUG-UGGGAAUGCUCUGCCUCAAUCCUGAAGCUAUGAUGGUUAAUCUAAUUCCGAGACCCG ---...((((((((((((.....))))))))))))((((.....-(.(((((.....((.(((....))).))...(((.....)))..))))).))))).. ( -28.90) >DroSec_CAF1 9409 99 + 1 ---AAUGUAUUUCCAUAAAUUUUGUGUGGGAGUGCGGUCCUUUGGCCCGAAUGCUUUGCCUCAAUCCUGAAGUUAGGAUGGUUAAUCUAAUUCCGAGACCCG ---...(((((((((((.......)))))))))))((((..((((............(((...((((((....)))))))))..........)))))))).. ( -26.25) >DroSim_CAF1 9497 99 + 1 ---AAUGUAUUUCCAUACAUUUAGUGUGGGAGUGCGGUCCUUUGGCCCGAACGCUUUGCCUCAAUCCUGAAGCUAGGAUGGUUAAUCUAAUUCCGAGACCCG ---...((((((((((((.....))))))))))))((((..((((............(((...((((((....)))))))))..........)))))))).. ( -30.15) >DroEre_CAF1 13235 98 + 1 ---AAUGUAUUUCCAUACAUUUUGUGUGGGAGUGCGGUCCCUUGG-GCAAAUGCUUUUCCUCAAUCCUGAAGCUCGGCUGGUUAAUCUAAUUCCAGGACUCG ---...((((((((((((.....))))))))))))(((((..(((-((....(((((...........)))))...))(((.....)))...)))))))).. ( -30.00) >DroYak_CAF1 9686 98 + 1 ---AAUGUAUUUCCAUACAUUUUGUGUGGGAGUGCGGUCCUUUGG-GCGAAUGCUUUUCCUCAAUCCCGAAGCUAGGAUAGUUAAUCUAAUUCCAGGACCCA ---...((((((((((((.....))))))))))))((((((((((-(.(((.....))))))))...........((((((.....)))..))))))))).. ( -34.20) >DroAna_CAF1 10590 82 + 1 GCAAAUUUACUAAUGUAAAC-AUGCGUGGGAGUA---UCCUU-G----GCAUCCUCUGG------CC-----CCCAGGCAGUUAAUCUAAUUCCGGGACCCA (((..(((((....))))).-.))).((((....---.....-(----((........)------))-----(((.((.(((((...)))))))))).)))) ( -21.60) >consensus ___AAUGUAUUUCCAUACAUUUUGUGUGGGAGUGCGGUCCUUUGG_GCGAAUGCUUUGCCUCAAUCCUGAAGCUAGGAUGGUUAAUCUAAUUCCGAGACCCG ......((((((((((((.....))))))))))))((((..((((.......(((((...........)))))..((((.....))))....)))))))).. (-15.16 = -17.08 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:48 2006