Locus 5990

Sequence ID 2R_DroMel_CAF1
Location 18,830,143 – 18,830,251
Length 108
Max. P 0.525109
window9606

overview

Window 6

Location 18,830,143 – 18,830,251
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.85
Mean single sequence MFE -31.86
Consensus MFE -16.90
Energy contribution -16.94
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.92
Structure conservation index 0.53
SVM decision value -0.02
SVM RNA-class probability 0.525109
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18830143 108 + 20766785
CCUCCUUUGCAUCUUUAGAUUCAGUUAUUGGCACCUCCGCCCUCAUCGACACCAGUAAGGGCUCCAGCUCGGAAUGCCUCAUGGCUCGAUAA------------GGAAUUGCAUCCUUGU
.......((((((((((...((((((((.((((.....(((((.((.(....).)).)))))(((.....))).))))..)))))).)))))------------)))..))))....... ( -27.20)
>DroSec_CAF1 4195 108 + 1
CCUCCUUUGCAUCUUUAGAUUCAGUUCUUGGCACCUCCGCCCUCAUCGACUCCAGCAAGGGCUCCAGCUCGGAAUGCCUCAUGGGUCGAUGA------------GGAAUUGCAUCCUCUU
.................(((.((((((..(((......)))(((((((((.(((....(((((((.....)))..))))..)))))))))))------------))))))).)))..... ( -38.40)
>DroSim_CAF1 4262 108 + 1
CCUCCUUUGCAUCUUUAGAUUCAGUUCUUGGCACCUCCGCCCUCAUCGACUCCAGCAAGGGCUCCAGCUCGGAAUGCCUCAUGGCUCGAUGA------------GGAAUUGCAUCCUCUU
.................(((.((((((..(((......)))((((((((..(((....(((((((.....)))..))))..))).)))))))------------))))))).)))..... ( -33.70)
>DroEre_CAF1 8025 108 + 1
GCUCCUUUCCACUAUUAUGUUCAGAUUUUGGGACCUUCGCCCUUAUUGAGUCCAGCAUGGGCUCCAGCUCGGAGUUCCUCAUGGCUCGAUUG------------GGAACUACAUCAUCUU
......(((((..(((.......)))..)))))......(((..((((((.(((....(((((((.....)))))))....))))))))).)------------)).............. ( -29.30)
>DroYak_CAF1 4340 120 + 1
CCUCCAUUGUACUUUUACGCUCAGAUUUUGGCACCUUCGCCCUUAUCGAAUCCAGCAUGGGCUGCAGCUCGGAGUUCCUCAUGGCUCGAUUGGGGACUCCAUUGGGAACCACAUCAUCUU
..(((.............(((..(((...(((......)))...))).....((((....)))).)))..(((((((((.((......)).)))))))))....)))............. ( -30.70)
>consensus
CCUCCUUUGCAUCUUUAGAUUCAGUUCUUGGCACCUCCGCCCUCAUCGACUCCAGCAAGGGCUCCAGCUCGGAAUGCCUCAUGGCUCGAUGA____________GGAAUUGCAUCCUCUU
..(((........................(((......)))...(((((..(((....((((....))))((....))...))).)))))..............)))............. (-16.90 = -16.94 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:47 2006