Locus 599

Sequence ID 2R_DroMel_CAF1
Location 3,060,274 – 3,060,385
Length 111
Max. P 0.603776
window1082

overview

Window 2

Location 3,060,274 – 3,060,385
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 84.74
Mean single sequence MFE -33.92
Consensus MFE -25.21
Energy contribution -27.40
Covariance contribution 2.19
Combinations/Pair 1.07
Mean z-score -1.55
Structure conservation index 0.74
SVM decision value 0.14
SVM RNA-class probability 0.603776
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3060274 111 + 20766785
UUCCCAGUUCGAUAGCACACAAACAUGUGUGGAGAUUGUCUGCCGAGUAACGCUCAUAAAUUACCACCCGCAAGCGGCAGGGAGGUAGGAUGAUGAAGUGGCAGGGGGCAG
.((((....((((..((((((....))))))...)))).((((((.....((.((((...(((((.(((((.....)).))).))))).))))))...))))))))))... ( -38.30)
>DroSec_CAF1 15881 109 + 1
UUCCCAGUUGGAUAGCACACAAACAUGUGUGGAGAUUGUCUGCCGAGUAACGCUCAUAAAUUACCACCCACAAGCGGCAGGGAGGUAGGAUGAUGAAGUGGCGGGCGGU--
.(((.....)))...((((((....))))))...(((((((((((.....((.((((...(((((.(((..........))).))))).))))))...)))))))))))-- ( -35.30)
>DroSim_CAF1 10827 110 + 1
UUCCCAGUUGGAUAGCACACAAACAUGUGUGGAGAUUGUCUGCCGAGUAACGCUCAUAAAUUACCACCCACAAGCGGCAGGGAGGUAGGAUGAUGAAGUGGCGGGCGGU-G
.(((.....)))...((((((....))))))...(((((((((((.....((.((((...(((((.(((..........))).))))).))))))...)))))))))))-. ( -36.00)
>DroEre_CAF1 10196 86 + 1
UUCCCAGUUCGAUAACACACAAACAUGUGUGGAGGUUGUCUGCCGAGCAACGCUCAUAAAUUACCACCCACA---GGCAGGGAGGUAGC----------------------
....(((..((((..((((((....))))))...)))).)))..((((...)))).....(((((.(((...---....))).))))).---------------------- ( -26.10)
>consensus
UUCCCAGUUCGAUAGCACACAAACAUGUGUGGAGAUUGUCUGCCGAGUAACGCUCAUAAAUUACCACCCACAAGCGGCAGGGAGGUAGGAUGAUGAAGUGGCGGGCGGU__
...............((((((....))))))....(((((((((((((...)))).....(((((.(((..........))).)))))...........)))))))))... (-25.21 = -27.40 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:29 2006