| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,824,406 – 18,824,502 |
| Length | 96 |
| Max. P | 0.628567 |
| Location | 18,824,406 – 18,824,502 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -17.93 |
| Consensus MFE | -12.40 |
| Energy contribution | -13.07 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.628567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18824406 96 + 20766785 UC---CCCC-CUCUC-------UCCAUCUCUUAGCCAACUUCUUUAACUGUCCUGUCAAUGGCACCGUCAUUUGUUUUGUUGGCCAUUACGGUCAGUGUCCCGAGUU ..---....-.....-------..............(((((.....((((.((.((.((((((.....((.......))...)))))))))).)))).....))))) ( -18.80) >DroSec_CAF1 16320 91 + 1 UC---CCCU-UCCCCCAGUUCAUCCCUCUCUCAGCCAACUUCUUUAACUGUCCUGUCAAUGGCACCGUCAUUUGUUUUGCUGGCCAUUACGGUCA------------ ..---....-.....(((((.........................)))))..((((.((((((.(.(.((.......))).)))))))))))...------------ ( -11.61) >DroSim_CAF1 15859 103 + 1 UC---CCCU-UCCCCCAGUUCAUCCCUCUCUCAGCCAACUUCUUUAACUGUCCUGUCAAUGGCACCGUCAUUUGUUUUGCUGGCCAUUACGGUCAGUGUCCCGAGUU ..---....-..........................(((((.....((((.((.((.((((((.(.(.((.......))).))))))))))).)))).....))))) ( -19.00) >DroEre_CAF1 14590 86 + 1 UA---CCCG------------------CUUCCAGCCAACUUCUUUAACUGUCCUGUCAAUGGCACCGUCAUUUGUAUUGUUGGCCAUUACGGUCAGUGUCCCGAGUU ..---...(------------------(.....)).(((((.....((((.((.((.((((((.....((.......))...)))))))))).)))).....))))) ( -19.40) >DroYak_CAF1 16077 98 + 1 AAAACCCCGCUCCCCCA---------ACUCCCAGUCAACUUCUUUAACUGUCCUGUCAAUGGCACCGUCAUUUGUUUUGUUGGCCAUUACGGUCAGUGUCCCGAGUU .................---------..........(((((.....((((.((.((.((((((.....((.......))...)))))))))).)))).....))))) ( -18.80) >DroAna_CAF1 11316 90 + 1 CC---GACACCCUCCCG---------GCUCCCUGCC-----UUUUAAAUGUCCUGUCAAUGGCACCGUCAUUUGUUUUGUUGCCCAUUACGGUCAGUGUCCCGAGUU ..---(((((......(---------((.....)))-----.......((.((.((.(((((((.((..........)).)).))))))))).)))))))....... ( -20.00) >consensus UC___CCCG_UCCCCCA_________UCUCCCAGCCAACUUCUUUAACUGUCCUGUCAAUGGCACCGUCAUUUGUUUUGUUGGCCAUUACGGUCAGUGUCCCGAGUU ..............................................((((.((.((.((((((.....((.......))...)))))))))).)))).......... (-12.40 = -13.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:46 2006