Locus 5987

Sequence ID 2R_DroMel_CAF1
Location 18,821,949 – 18,822,051
Length 102
Max. P 0.967341
window9601

overview

Window 1

Location 18,821,949 – 18,822,051
Length 102
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 89.15
Mean single sequence MFE -17.00
Consensus MFE -15.74
Energy contribution -15.63
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.93
SVM decision value 1.61
SVM RNA-class probability 0.967341
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18821949 102 - 20766785
AGCUGUCGGCAGCACAAUUAAAAAUGUGCAAACUUGCAUUAUUAAAAUAAAGAAUUUCAUUUCAUUCCGUCCGACACUU-UUCCAACCCCUUUCCCCCCCCCC
...(((((((.(((((........)))))......................(((......))).....).))))))...-....................... ( -16.80)
>DroSec_CAF1 13964 96 - 1
GGCUGUCGGCAGCACAAUUAAAAAUGUGCAAACUUGCAUUAUUAAAAUAAAGAAUUUCAUUUCAUUCCGCCCGACACUU-UUCCAACCGCUUUCCAA------
((.(((((((.(((((........)))))......................(((......))).....).))))))...-..)).............------ ( -17.00)
>DroSim_CAF1 13489 96 - 1
AGCUGUCGGCAGCACAAUUAAAAAUGUGCAAACUUGCAUUAUUAAAAUAAAGAAUUUCAUUUCAUUCCGCCCGACACUU-UUCCAACCGCUUUCCAA------
...(((((((.(((((........)))))......................(((......))).....).))))))...-.................------ ( -16.80)
>DroEre_CAF1 12154 96 - 1
AGCUGUCGGCAGCACAAUUAAAAAUGUGCAAACUUGCAUUAUUAAAAUAAAGAAUUUCAUUUCAUUCCGCCCGACACUU-UCCAAAGCGGUUUUCUC------
...(((((((.(((((........)))))......................(((......))).....).))))))...-.................------ ( -16.80)
>DroYak_CAF1 12809 97 - 1
AGCUGUCGGCAGCACAAUUAAAAAUGUGCAAACUUGCAUUAUUAAAAUAAAGAAUUUCAUUUCAUUCCGCCCGACACUUUUUCCAAGCGGCUUUUCA------
((((((((((.(((((........)))))......................(((......))).....).))))).(((.....))).)))).....------ ( -17.80)
>DroAna_CAF1 8727 90 - 1
AGCUGUCGGCAGCACAAUUAAAAAUGUGCAAACUUGCAUUAUUAAAAUAAAGAAUUUCAUUU-----CGCCUGACACUU-UCCUAAGCGGUCUCCC-------
...(((((((.(((((........)))))......................(((......))-----)))).))))...-................------- ( -16.80)
>consensus
AGCUGUCGGCAGCACAAUUAAAAAUGUGCAAACUUGCAUUAUUAAAAUAAAGAAUUUCAUUUCAUUCCGCCCGACACUU_UUCCAACCGCUUUCCCA______
((.(((((((.(((((........)))))......................(((......))).....).))))))))......................... (-15.74 = -15.63 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:42 2006