| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,820,403 – 18,820,502 |
| Length | 99 |
| Max. P | 0.747913 |
| Location | 18,820,403 – 18,820,502 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.93 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -15.38 |
| Energy contribution | -15.68 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18820403 99 + 20766785 -UCACAUAUCCGGAGAUACG---------------CAUCCUAAUUGUUGCGCUCCAGGAUUUUAUGGUUCUUUGAGAGCCAUUAAUCCGAAUUUGAUAUCUGCCUAAUUAGUUUU -.((.(((((.((((...((---------------((..........)))))))).(((((..(((((((.....))))))).)))))......))))).))............. ( -27.10) >DroGri_CAF1 6707 94 + 1 ---UCACAUCCUUAGG-ACU---------------CUGGCUAAUUGUUGCGCCAACGAAUUUUACGGCACUUUGAAAGCCGUUAAUCCGCAUUU--UAUGUACUUAAUUAGUUUC ---.....(((...))-)..---------------..(((((((((.((((....((.(((..(((((.........))))).))).)).....--..))))..))))))))).. ( -14.70) >DroSec_CAF1 12362 98 + 1 --CACAUAUCCGGAGAUACG---------------CAUCCUAAUUGUUGCGCUCCAGGAUUUUAUGGUUCUUUGAGAGCCAUUAAUCCGAAUUUGAUAUCUGCCUAAUUAGUUUU --((.(((((.((((...((---------------((..........)))))))).(((((..(((((((.....))))))).)))))......))))).))............. ( -27.00) >DroEre_CAF1 10512 114 + 1 -UCACAUAUCCGUAGAUACGUGGAUUCAACAGCCCCAUCCUAAUUGUUGCGCCCCAGGAUUUUAUGGUUCUUUGAGAGCCAUUAAUCCGAAUUUGAUAUCUGCCUAAUUAGUUUU -..........(((((((..(..((((....((..((.......))..))......(((((..(((((((.....))))))).)))))))))..).)))))))............ ( -27.70) >DroYak_CAF1 11077 101 + 1 -UCACAUAUCCGCAGAUACA-------------CCCAUCCUAAUUGUUGCGCCCCAGGAUUUUAUGGUUCUUUGAGAGCCAUUAAUCCGAAUUUGAUAUCUGUCUAAUUAGUUUU -..........(((((((((-------------..((.......))..........(((((..(((((((.....))))))).))))).....)).)))))))............ ( -20.70) >DroAna_CAF1 6775 106 + 1 CGCACAUAUCCGGCGAUCCA---------CAGCCACAUCCUAAUUGUUGCGCCCCGGGAUUUUAUGGCAUUUUGAAAGCCAUUAAUCCGAAUUUGAUAUCUGCUUAAUUAGUUUU .(((.(((((.((((.....---------).((.(((.......))).)))))...(((((..(((((.........))))).)))))......))))).)))............ ( -25.50) >consensus _UCACAUAUCCGGAGAUACG_______________CAUCCUAAUUGUUGCGCCCCAGGAUUUUAUGGUUCUUUGAGAGCCAUUAAUCCGAAUUUGAUAUCUGCCUAAUUAGUUUU .......................................(((((((..((......(((((..(((((((.....))))))).)))))((........)).)).))))))).... (-15.38 = -15.68 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:41 2006