Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,817,552 – 18,817,670 |
Length | 118 |
Max. P | 0.962724 |
Location | 18,817,552 – 18,817,670 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 84.35 |
Mean single sequence MFE | -48.42 |
Consensus MFE | -33.77 |
Energy contribution | -36.89 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.05 |
Mean z-score | -2.62 |
Structure conservation index | 0.70 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18817552 118 + 20766785 AUCCGCAGCGGCAAUUCGCAGUCUCCGAUUCCAUUGGCAUUUCAUGGUUAGUGGGUGAGAGUGGUCGCAGCGGCACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..(((((((((..((.....))..)))..((((((((.((((((((((..((.((((((((((.(((...))))))))))))).)).)))...)))))))))))))))....)))))) ( -48.40) >DroSec_CAF1 9456 110 + 1 AUCCGCAGCGGCAAG--------GCCGAUUCCAUUGGCAUUUCAUUGUUAGUGGGUGAGAGUGGUCGCGGCGACACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..((((((((((...--------))))..((((((((.((((((((....((.((((((((((.(((...))))))))))))).))......))))))))))))))))....)))))) ( -50.80) >DroEre_CAF1 7768 114 + 1 GUCCGCAGUGGCAAGGC-CAGUCUCCGGUUCCAUUGGCAGGUCAUGGUUAGUGGGUGAGAGUGGCUGCGG---CACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..((((((((((...))-))......(((.(((((((.(..(((((((..((.((((((((((.(...).---)))))))))).)).)))...))))..)))))))))))..)))))) ( -49.20) >DroYak_CAF1 8234 103 + 1 ------------AAGGC-CAGUCUCCGAUUCCAUUGGCAUUUCAUGGUUAGUGGGUGAGAGUGGCUGCGGC--CACUUUCGCCGGCCACCCAAGUGGAAUGCAAUGGACCUUCUGUGG ------------.....-...........(((((((.(((((((((((..((.((((((((((((....))--)))))))))).)).)))...)))))))))))))))((......)) ( -45.30) >consensus AUCCGCAGCGGCAAGGC_CAGUCUCCGAUUCCAUUGGCAUUUCAUGGUUAGUGGGUGAGAGUGGCCGCGGC__CACUUUCGCCGGCCACCCAAGUGGAAUCCAAUGGACCUUCUGUGG ..(((((((((.............)))..((((((((.((((((((((..((.((((((((((((....))..)))))))))).)).)))...)))))))))))))))....)))))) (-33.77 = -36.89 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:39 2006