| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,811,716 – 18,811,808 |
| Length | 92 |
| Max. P | 0.766763 |
| Location | 18,811,716 – 18,811,808 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.95 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -19.54 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18811716 92 + 20766785 UUGUGUCUGGCCUAAAUGGCUGAAAUAUGGCCAGUUGACUUGCCAGGGUCGAUUUUUGCAUAAAUUAGAAAUGGCU--------------------------CGCUGGCCA-AGGGGUC- .(((.((.((((.....)))))).)))((((((((.((...((((...(((((((......))))).))..)))))--------------------------)))))))))-.......- ( -28.80) >DroSec_CAF1 3600 92 + 1 UUGUGUCUGGCCUAAAUGGCUGAAAUAUGGCCAGUUGACUUGCCAGGGUCGAUUUUUGCAUAAAUUAGACAUGGCU--------------------------CGCUGGCCA-AGGGGUC- .(((.((.((((.....)))))).)))((((((((.((...((((..((((((((......))))).))).)))))--------------------------)))))))))-.......- ( -31.30) >DroSim_CAF1 3659 92 + 1 UUGUGUCUGGCCUAAAUGGCUGAAAUAUGGCCAGUUGACUUGCCAGGGUCGAUUUUUGCAUAAAUUAGACAUGGCU--------------------------CGCUGGCCA-AGGGGUC- .(((.((.((((.....)))))).)))((((((((.((...((((..((((((((......))))).))).)))))--------------------------)))))))))-.......- ( -31.30) >DroEre_CAF1 2250 83 + 1 ---------GCCUAAAUGGCUGAAAUAUGGCCAGUUGACUUGCCAGGGUCGCUUUUUGCAUAAAUUAGACAUGGCU--------------------------CGCUGGCCA-AGGGGUC- ---------(((.....))).......((((((((.((...((((..(((...(((.....)))...))).)))))--------------------------)))))))))-.......- ( -28.30) >DroYak_CAF1 2399 93 + 1 UUGUGUCUGGCCUAAAUGGCUGAAAUAUGGCCAGUUGACUUGCCAGGGUCGAUUUUUGCAUAAAUUAGACAUGGCU--------------------------CGCUGGCCAAAGGGGUC- .(((.((.((((.....)))))).)))((((((((.((...((((..((((((((......))))).))).)))))--------------------------)))))))))........- ( -31.30) >DroMoj_CAF1 13206 119 + 1 GUGUAUGUGUGUUGAAUAGCUAAAAUAUGGCCAGUUGGCUUGUUGGGGUCGAUUUUUGCAUAAAUUAGUAACAGACAGAAAUGUACUUUGGGACAGAGCAGGAGCUGGUGC-AGGAGCAG .....(((..(((((....((((.....((((....))))..))))..)))))((((((((......((..((((((....)))...)))..))..(((....))).))))-))))))). ( -25.70) >consensus UUGUGUCUGGCCUAAAUGGCUGAAAUAUGGCCAGUUGACUUGCCAGGGUCGAUUUUUGCAUAAAUUAGACAUGGCU__________________________CGCUGGCCA_AGGGGUC_ ........((((.....))))......((((((((.(((((....)))))(((((......))))).....................................))))))))......... (-19.54 = -19.98 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:34 2006