Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,056,117 – 3,056,208 |
Length | 91 |
Max. P | 0.767516 |
Location | 3,056,117 – 3,056,208 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.20 |
Mean single sequence MFE | -38.58 |
Consensus MFE | -27.12 |
Energy contribution | -28.96 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.07 |
Mean z-score | -1.63 |
Structure conservation index | 0.70 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3056117 91 - 20766785 GCUGGCACCCCUCUCCUCCUUUGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUG-AUGAGAAGGGUUGGCGGG------------ ((..((.((.(((.((.((((.((.....))((((((...((((.........)))).)))))))))).))..-..)))..))))..))...------------ ( -34.80) >DroSec_CAF1 11388 90 - 1 GCUGGCAUCCCUCUCCUCCUUAGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUU-AUGAGGAGGGU-UGCGGG------------ .((.(((.((((((((.((((.((.....))((((((...((((.........)))).)))))))))).))..-....)))))).-))).))------------ ( -37.50) >DroSim_CAF1 6433 92 - 1 GCUGACACCCCUCUCCUCCUUAGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUAGAUGAGGAGGUUUUGGGGG------------ .......((((...((((((((..(((((..((((((...((((.........)))).))))))..)).)))...))))))))....)))).------------ ( -38.80) >DroEre_CAF1 5754 97 - 1 GCUGGCUACCCUCCCCUCCACA-GACUCUCCGCCCAC---CACCCCC-GUCAAGGUGAGUGAGCAAGGCGGUG-AUGAGGAGGCUUGAGGGGGUACCAUCCC-C ..(((.(((((((((((((.((-...((.((((((((---((((...-.....)))).))).....))))).)-))).)))))...).))))))))))....-. ( -40.50) >DroYak_CAF1 5777 99 - 1 GCUGGCUGCCCUCCCCUCCUCA-GAAUCUCCGCCCAC---CACCCCCUGCCAAGGUGAGUUAGCAAGGCGGUG-AUGAGGAGGCUUGCGGGGGUACCAUCCCCC ..(((.((((((((((((((((-...((.((((((((---(............)))).(....)..))))).)-)))))))))...).))))))))))...... ( -41.30) >consensus GCUGGCACCCCUCUCCUCCUUAGGACUCUCCGCUCACACCCACCAUCCGCCAAGGUGAGUGAGCAAGGCGGUG_AUGAGGAGGCUUGGGGGG____________ ........(((((.((((((((....((.((((((((...((((.........)))).))))))..)).))....))))))))...)))))............. (-27.12 = -28.96 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:28 2006