| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,810,233 – 18,810,345 |
| Length | 112 |
| Max. P | 0.855226 |
| Location | 18,810,233 – 18,810,345 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 93.08 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -26.43 |
| Energy contribution | -26.27 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.855226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18810233 112 - 20766785 -UGGGCGG---GUGAGCAGGUAAACUGCAGCAAAUUUCAUACUAUUGAGUGGUUUUUGAGUGCAUUUGAAAUAAAUGUUAUCAAUGAAGUUGCAUACUUUAUGGCCGCAAUGCCCG -.(((((.---((..((((.....)))).)).....(((......)))((((((..(((..(((((((...)))))))..)))(((((((.....)))))))))))))..))))). ( -32.60) >DroVir_CAF1 8916 115 - 1 UUGGGUGAGUUGUGUGCAGGUAAACUGCAACAAAUUUCAUACUAUUGAGUGGUUUUUGAGUGCAUUUGAAAUAAAUGUUAUCAAUGAAGUUGCAUACUUUAUGGC-GCAACGUCGA .....((((((((((((((.....))))....(((((((((((....))))....((((..(((((((...)))))))..)))))))))))............))-))))).))). ( -27.30) >DroSec_CAF1 2100 112 - 1 -UGGGCAG---UAGAGCAGGUAAACUGCAGCAAAUUUCAUACUAUUGAGUGGUUUUUGAGUGCAUUUGAAAUAAAUGUUAUCAAUGAAGUUGCAUACUUUAUGGCCGCAAUGUCCG -.(((((.---....((((.....))))........(((......)))((((((..(((..(((((((...)))))))..)))(((((((.....)))))))))))))..))))). ( -30.10) >DroSim_CAF1 2163 112 - 1 -UGGCCGG---GAGAGCAGGUAAACUGCAGCAAAUUUCAUACUAUUGAGUGGUUUUUGAGUGCAUUUGAAAUAAAUGUUAUCAAUGAAGUUGCAUACUUUAUGGCCGUAAUGCCCG -.((((((---(((.((((.....)))).((((.(((((((((....))))....((((..(((((((...)))))))..)))))))))))))...)))).))))).......... ( -31.10) >DroEre_CAF1 803 112 - 1 --GUGCAG--GGAGAGCAGGUAAACUGCAGCAAAUUUCAUACUAUUGAGUGGUUUUUGAGUGCAUUUGAAAUAAAUGUUAUCAAUGAAGUUGCAUACUUUAUGGCCGCAAUGCCCG --.....(--((...((((.....))))........(((......)))((((((..(((..(((((((...)))))))..)))(((((((.....)))))))))))))....))). ( -28.20) >DroYak_CAF1 815 112 - 1 -UGGGCAG---AAGAGCAGGUAAACUGCAGCAAAUUUCAUACUAUUGAGUGGUUUUUGAGUGCAUUUGAAAUAAAUGUUAUCAAUGAAGUUGCAUACUUUAUGGCCGCAAUGCCCG -.(((((.---....((((.....))))........(((......)))((((((..(((..(((((((...)))))))..)))(((((((.....)))))))))))))..))))). ( -32.80) >consensus _UGGGCAG___GAGAGCAGGUAAACUGCAGCAAAUUUCAUACUAUUGAGUGGUUUUUGAGUGCAUUUGAAAUAAAUGUUAUCAAUGAAGUUGCAUACUUUAUGGCCGCAAUGCCCG ..(((((........((((.....))))........(((......)))((((((..(((..(((((((...)))))))..)))(((((((.....)))))))))))))..))))). (-26.43 = -26.27 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:31 2006