Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,808,831 – 18,808,951 |
Length | 120 |
Max. P | 0.748480 |
Location | 18,808,831 – 18,808,951 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.27 |
Mean single sequence MFE | -26.53 |
Consensus MFE | -17.82 |
Energy contribution | -18.60 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.12 |
Mean z-score | -1.93 |
Structure conservation index | 0.67 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18808831 120 + 20766785 AUCGAAGUGCUCAAGCCACUUGAAUAUAUGGAAUCCAUUAUUCGGAAAAUCCAUUAGUAUAUUUCAGCGGAGGACUUGAAGCUACCAAAUUUCCGUUCUACACUUAAAUUGAUGCAACAA .......(((((((.((.((.(((((((((((.(((.......)))...))))....))))))).)).))(((((..((((........)))).))))).........)))).))).... ( -22.40) >DroSec_CAF1 729 107 + 1 AUCGAAGUGGUAAAGCUACUUGAAAAUAUGGAAACCAUUAUUCGGAAAAUCCAUUAGUAUAGUUCAGCGGAGGCCACUCUGCUGGCCA-------------ACUAACAUGAAUGCAACAA .((.((((((.....))))))))......(....)...(((((((.....)).(((((...(..((((((((....))))))))..).-------------)))))...)))))...... ( -28.60) >DroSim_CAF1 789 107 + 1 AUCGAAGUGGUGAAGCUACUUGAAAAUAUGGAAACCAUUAUUCGGAAAAUCCAUUAGUAUAGUUCAGCGGAGGCCACUCUGCUGGCCA-------------ACUAACAUGAAUGCAACAA .....((((((....(((..(....)..)))..))))))((((((.....)).(((((...(..((((((((....))))))))..).-------------)))))...))))....... ( -28.60) >consensus AUCGAAGUGGUAAAGCUACUUGAAAAUAUGGAAACCAUUAUUCGGAAAAUCCAUUAGUAUAGUUCAGCGGAGGCCACUCUGCUGGCCA_____________ACUAACAUGAAUGCAACAA ....((((((.....))))))(((...((((...))))..)))((.....)).........(..((((((((....))))))))..)................................. (-17.82 = -18.60 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:28 2006