Locus 5971

Sequence ID 2R_DroMel_CAF1
Location 18,803,196 – 18,803,292
Length 96
Max. P 0.990935
window9576

overview

Window 6

Location 18,803,196 – 18,803,292
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 93.68
Mean single sequence MFE -24.55
Consensus MFE -20.92
Energy contribution -20.62
Covariance contribution -0.31
Combinations/Pair 1.07
Mean z-score -2.94
Structure conservation index 0.85
SVM decision value 2.24
SVM RNA-class probability 0.990935
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18803196 96 - 20766785
UUUGUCGCCUUUUAUGGUUUCUUAUUUAAAAGCCAUAAAAUUCAGCACAUGUCUUCAAUUUGGGUGUCUCGGCUGUCAAAUUGGACAUUUCCUUCG
..(((.(..(((((((((((.........)))))))))))..).))).(((((..((((((((..((....))..)))))))))))))........ ( -21.90)
>DroPse_CAF1 71614 96 - 1
UUUGUUGUCUUUUAUGGUUUCUUAUUUAAAAGCCAUAAAAUUCAGCACAUGUCUUCAAUUUGUGCGUCUCGGCUGUCAAAUUGGGCAUUUCCUCUG
..(((((..(((((((((((.........)))))))))))..))))).(((((..(((((((.((......))...))))))))))))........ ( -25.60)
>DroEre_CAF1 22670 96 - 1
UUCGCCGUCUUUUAUGGUUUCUUAUUUAAAAGCCAUAAAAUUCAGCACAUGUCUUCAAUUUGGGUGUCUCGGCUGUCAAAUUGGACAUUUCCUUCG
...((.(..(((((((((((.........)))))))))))..).))..(((((..((((((((..((....))..)))))))))))))........ ( -24.00)
>DroYak_CAF1 22997 95 - 1
UUUGCCGUCUUUUAUGGUUUCUUAUUUA-AAGCCAUAAAAUUCAGCACAUGUCUUCAAUUUGGGUGUCUCGGCUGUCAAAUUGGACAUUUCCUUCG
..(((.(..(((((((((((........-)))))))))))..).))).(((((..((((((((..((....))..)))))))))))))........ ( -25.10)
>DroAna_CAF1 10542 96 - 1
UUUGCGUCGUUUUAUGGUUUCUUAUUUAAAAGCCAUAAAAUUCAGCACAUGUCUUCAAUUUGGGCGUCUCGGCUGUCAAAUUGGACAUUUCCUCUG
..(((...((((((((((((.........))))))))))))...))).(((((..((((((((((......)))..))))))))))))........ ( -25.10)
>DroPer_CAF1 71542 96 - 1
UUUGUUGUCUUUUAUGGUUUCUUAUUUAAAAGCCAUAAAAUUCAGCACAUGUCUUCAAUUUGUGCGUCUCGGCUGUCAAAUUGGGCAUUUCCUCUG
..(((((..(((((((((((.........)))))))))))..))))).(((((..(((((((.((......))...))))))))))))........ ( -25.60)
>consensus
UUUGCCGUCUUUUAUGGUUUCUUAUUUAAAAGCCAUAAAAUUCAGCACAUGUCUUCAAUUUGGGCGUCUCGGCUGUCAAAUUGGACAUUUCCUCCG
...((.(..(((((((((((.........)))))))))))..).))..(((((..(((((((...((....))...))))))))))))........ (-20.92 = -20.62 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:19 2006