| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,801,874 – 18,801,966 |
| Length | 92 |
| Max. P | 0.698072 |
| Location | 18,801,874 – 18,801,966 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.10 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -13.94 |
| Energy contribution | -14.28 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.698072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18801874 92 + 20766785 CAGCCCC-----------------------CCCCACCCUCUCCC---AUCAGCUUGUUUGGGGCUCCUCGCGUUUUUCGCGCCGCGCAAGCCGAUAAUUUAUUAAAGGCGAUUAUUAU .((((((-----------------------...((..((.....---...))..))...))))))....(((.....)))(((((....)).((((...))))...)))......... ( -22.20) >DroPse_CAF1 69194 88 + 1 CACUCCA-----------------------CUCCACUC---CCU---UUGGGCUUGUUUGA-GCUCCUCGCGUUUUUCGCGCCGCGCAAGCCGAUAAUUUAUUAAAGGCGAUUAUUAU .......-----------------------......((---(((---((((((((((....-((....((((.....))))..)))))))))((....))..)))))).))....... ( -19.90) >DroSec_CAF1 21297 80 + 1 CAGCCAC-----------------------------------CC---UUCAGCUUGUUUGGGGCUCCUCGCGUUUUUCGCGCCGCGCAAGCCGAUAAUUUAUUAAAGGCGAUUAUUAU ..(((..-----------------------------------..---.((.((((((.((((....).((((.....))))))).)))))).))(((....)))..)))......... ( -19.70) >DroEre_CAF1 21314 103 + 1 CCUUCCCAUUUCCCCU------------CCCCUGACCAGCUCCCCU---CAGCUUGUUUGGGGCUCCUCGCGUUUUUCGCGCCGCGCAAGCCGAUAAUUUAUUAAAGGCGAUUAUUAU ................------------((((.(((.((((.....---.)))).))).))))......(((.....)))(((((....)).((((...))))...)))......... ( -25.80) >DroYak_CAF1 21655 118 + 1 CAUCCCCAACCCCCCUUCCAUUUCCCCUCCCUUGACCAGCCCCCCUCUUCAGCUUGUUUGGGGCUCCUCGCGUUUUUCGCGCCGCGCAAGCCGAUAAUUUAUUAAAGGCGAUUAUUAU ...........................((((((((..((((((...(........)...))))))..))((((.....)))).((....)).............)))).))....... ( -24.00) >DroPer_CAF1 70187 88 + 1 CACUCCA-----------------------CUCCACUC---CCU---UUGGGCUUGUUUGA-GCUCCUCGCGUUUUUCGCGCCGCGCAAGCCGAUAAUUUAUUAAAGGCGAUUAUUAU .......-----------------------......((---(((---((((((((((....-((....((((.....))))..)))))))))((....))..)))))).))....... ( -19.90) >consensus CACCCCC_______________________CUCCACCC___CCC___UUCAGCUUGUUUGGGGCUCCUCGCGUUUUUCGCGCCGCGCAAGCCGAUAAUUUAUUAAAGGCGAUUAUUAU ...................................................((((((.(((.......((((.....))))))).)))))).(((((((..........))))))).. (-13.94 = -14.28 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:18 2006