Locus 597

Sequence ID 2R_DroMel_CAF1
Location 3,044,956 – 3,045,055
Length 99
Max. P 0.805194
window1080

overview

Window 0

Location 3,044,956 – 3,045,055
Length 99
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 81.83
Mean single sequence MFE -24.66
Consensus MFE -16.30
Energy contribution -15.62
Covariance contribution -0.68
Combinations/Pair 1.35
Mean z-score -2.00
Structure conservation index 0.66
SVM decision value 0.63
SVM RNA-class probability 0.805194
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3044956 99 - 20766785
UACUGCAUACUUUUGGGCGCGAUAAGACCAGUGCUCCAAAGCACCUCAUUAAUUUUGGCGCCCAAUUUGA-AAUGUGAGAAAACCCUUUAGUGAAAUAAA----
((((((((....((((((((..........(((((....)))))..((.......)))))))))).....-.))))(((......))).)))).......---- ( -22.60)
>DroSec_CAF1 6315 98 - 1
UAUUGCAUACUCUUGGGCGCGAUAGGACCAGUGCUCAAAAGCACCUCAUUUAUUUUGGCGCCCA-UUUGA-AAUGUGAGAAAACCUGUCAGGGAAACAAA----
..(..(((..((.(((((((((((((....(((((....)))))....))))))...)))))))-...))-.)))..).....(((....))).......---- ( -27.00)
>DroSim_CAF1 6428 97 - 1
UACUGCAUACUUUUGGGCGCGAUAAGACCAGUGCUCAAAAACACCACAUUUAUUUUGGCGCCCA-UUUGA-AAUGUGAGAAAAUCCUUCAG-GAAACAAA----
..........((((((((((..........))))))))))....(((((((....(((...)))-....)-))))))......(((....)-))......---- ( -22.70)
>DroEre_CAF1 7098 99 - 1
UACUGCAUACUUUUGGGCGCGAGUCUACCAGUGCUCACAAAUACCUCAUUUAAUUUGGCGCCCA-UUUGAAAAUGCAGGCAAACUCUUACGGAAAACAAA----
..((((((..((.(((((((((((........)))).(((((..........))))))))))))-...))..))))))......................---- ( -27.80)
>DroYak_CAF1 6374 103 - 1
UACUGCAUACUUUUAGGUGCGAUAGUACCAGUGCUCACAAAUACCUCAUUUAUUUUGGCGCUAA-UUCGAAAAUGUAGGAAACCUCUUAGGUGAAACAAACAAU
..((((((.......(((((....)))))(((((.((.(((((.......))))))))))))..-.......))))))...(((.....)))............ ( -23.20)
>consensus
UACUGCAUACUUUUGGGCGCGAUAAGACCAGUGCUCAAAAACACCUCAUUUAUUUUGGCGCCCA_UUUGA_AAUGUGAGAAAACCCUUAAGGGAAACAAA____
..((((((..((.(((((((..........(((........)))..((.......)))))))))....))..)))))).......................... (-16.30 = -15.62 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:27 2006