Locus 5967

Sequence ID 2R_DroMel_CAF1
Location 18,798,850 – 18,798,952
Length 102
Max. P 0.887817
window9571

overview

Window 1

Location 18,798,850 – 18,798,952
Length 102
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 77.28
Mean single sequence MFE -17.87
Consensus MFE -8.38
Energy contribution -9.72
Covariance contribution 1.34
Combinations/Pair 1.07
Mean z-score -2.15
Structure conservation index 0.47
SVM decision value 0.95
SVM RNA-class probability 0.887817
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18798850 102 - 20766785
UUGGGCAACAGAUUUCCCAUCCAAUUCAUAUCAAUUUGUCAACUGCGACAAAUAAACUAUAC--AUAC-------AGCGACCUCUGCUGCAACCCCACCGCCCCAUGCAGU
..((((...........................(((((((......))))))).........--...(-------((((.....)))))..........))))........ ( -19.20)
>DroSim_CAF1 18272 104 - 1
UCGGGCAACAGAUUUCCCAUCCAAUUCAUAUCAAUUUGUCAACUGCGACAAAUAAACUAUACAUAUAC-------AGCGACCUCUGCUGCAACCCCACCGCCCCAUGCAGU
..((((...........................(((((((......)))))))..............(-------((((.....)))))..........))))........ ( -19.50)
>DroEre_CAF1 18504 96 - 1
--GUUCCACAGAUUUCCCAUCCAAUUCAUAUCAAUUUGUCAACUGCGACAAAUAAACUAUAU--GUAC-------AGCG-CC---CCUGCAACCCCACCACCCAAUGCAGU
--(((..((((((................))).(((((((......)))))))........)--))..-------))).-..---.(((((..............))))). ( -11.73)
>DroYak_CAF1 18582 106 - 1
CUGGGCAACAGAUUUCCCAUCCAAUUCAUAUCAAUUUGUCAACUGCGACAAAUAAACUAUAU--AAACUGUAUAAGGCGACC---CGUGCAACCCCACCGCCCAAUGCAGU
.((((.((....)).))))..............(((((((......))))))).........--..(((((((..((((...---.(((......)))))))..))))))) ( -23.40)
>DroAna_CAF1 5555 90 - 1
CCUUUCUACAGAUUUCUCAGCCAAUUCAUAUCAAUUUGUCAACUGCGGCAAAUAAACCGGCCAUGUAC-------UG--------------AUUUGGCCGCCCCAUUCACU
.................................(((((((......)))))))....((((((.((..-------..--------------)).))))))........... ( -15.50)
>consensus
CCGGGCAACAGAUUUCCCAUCCAAUUCAUAUCAAUUUGUCAACUGCGACAAAUAAACUAUAC__AUAC_______AGCGACC___CCUGCAACCCCACCGCCCCAUGCAGU
..((((...........................(((((((......))))))).......................(((........))).........))))........ ( -8.38 =  -9.72 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:14 2006