Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,797,102 – 18,797,197 |
Length | 95 |
Max. P | 0.718274 |
Location | 18,797,102 – 18,797,197 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -25.43 |
Consensus MFE | -22.64 |
Energy contribution | -23.08 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.41 |
Structure conservation index | 0.89 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18797102 95 - 20766785 GUGAUGCCAAAGCUGAUCCUUAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA ((((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))).......... ( -29.20) >DroVir_CAF1 23312 88 - 1 --GAUGCUAAAGCUGAUCCUGAGAUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAACCAAGCGUCAUGCAUCG--GCAUCACGAGCU---GA --(((((..(.((((((.((.....((.((((...((((((.....))))))....)))))))).)))).)).)..--))))).......---.. ( -20.00) >DroEre_CAF1 16800 95 - 1 CUGAUGCCAAAGCUGAUCCUUAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA .(((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))........... ( -27.80) >DroYak_CAF1 16777 95 - 1 CUGAUGCCAAAGCUGAUCCUUAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA .(((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))........... ( -27.80) >DroMoj_CAF1 21978 88 - 1 --GAUGCUAAAGCUGAUCCUGAGAUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUCG--GCAUCGCCAGCU---GA --(((((....(((....(((((.((((......))))((...........)).)))))...))).....)))))(--((...)))....---.. ( -21.90) >DroAna_CAF1 3926 95 - 1 CUGAUGCUAAAGCUGAUCCCGAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACAA .(((((((.((((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).))..)))))))........... ( -25.90) >consensus CUGAUGCCAAAGCUGAUCCUGAGCUUGUGUUGUAACAAGUUAAUUGAAUUUGCACUCAGCCAAGCGUCAUGCAUUGGGGCAUCAUGAGCUUACGA ..((((((...((((((.....(((((.((((...((((((.....))))))....))))))))))))).)).....))))))............ (-22.64 = -23.08 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:13 2006